rename num_binned/assembled/not_found to coverage_binned/assembled/no… #590
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test SingleM with Setup-Miniconda From Marketplace | |
| on: [push, pull_request] | |
| jobs: | |
| miniconda: | |
| name: Miniconda ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/[email protected] | |
| with: | |
| activate-environment: test | |
| environment-file: singlem.yml | |
| python-version: 3.9 # 3.10 fails to setup environment | |
| # auto-activate-base: false | |
| # mamba-version: "*" # Appears to be broken as of writing. | |
| channels: conda-forge,defaults,bioconda | |
| - run: | | |
| conda info | |
| conda list | |
| - run: | | |
| pip install -e . | |
| - name: Run pytest | |
| run: | | |
| pytest test |