This is a repository for the task assigned to team-sanger during the 5 weeks internship programme organised by HackBio in the year 2020. It is more of a collaborative project assignments. Each team member will fork the repository and make the neccesary changes applicable to the assigned task. This Repo belongs to team Sanger members to collaborate on the assignments This README.md contains information about the names of the members of this team Sanger. All members are required to add their names, as well add informaton about the softwares they used and if there are dependencies needed state them clearly. For instance: I used Python 3.7 to generate my script_wgatua.py. So to execute the script successfully you need to install python 3.7 in your computer.
Please kindly add your names here to have a comprehensive list of the Sanger Team.
- Winfred Gatua
- Akurut Eva
- Umar Ahmad
- Khatendra Reang
- Maruf Ahmed
- Olayemi Rotimi
- Ankita Kumari
- Ibiyinka Daramola
- Adepoju Ayodeji
- Lawrence Edemhanria
- Olayemi Olaoluwa Samuel
- Semilogo Sonaike
- Rajesh Chavhan
- Shodunke Oluwasefunmi
- Olajide Emmanuel
Use the table below to key in your name and programming language used to generate your script. If there are dependencies (in the language used), please kindly mention it in the table too.
| Name | Language | Dependencies |
|---|---|---|
| Winfred Gatua | Javascript,bash | NodeJs Runtime Environment Download,node download link |
| Akurut Eva | Julia | Julia installation |
| Adepoju Ayodeji | Python 3.7 | Python 3.7 |
| Maruf Ahmed | Perl | Perl installlation (v5.30.3)(https://www.perl.org/get.html) |
| Maruf Ahmed | PHP | PHP (v7.3.11)(https://www.geeksforgeeks.org/how-to-execute-php-code-using-command-line/) |
| Maruf Ahmed | R | R (v3.6.3)(https://www.datacamp.com/community/tutorials/installing-R-windows-mac-ubuntu) |
| Maruf Ahmed | Python | Python (v3.7.7) |
| Akurut Eva | Julia | Julia installation |
| Olayemi Rotimi | Python 3.8 | |
| Ibiyinka Daramola | Python 3.8 | |
| Khatendra Reang | Bash | |
| Lawrence Edemharia | Python | Code writer version 4.1 Build 39 |
| Ankita Kumari | bash | |
| Olayemi Olaoluwa Samuel | PHP | |
| Semilogo Sonaike | C | gcc.exe (tdm64-1) 9.2.0 https://jmeubank.github.io/tdm-gcc/articles/2020-03/9.2.0-release |
| Rajesh Chavhan | Python3 | Python 3.8(https://www.python.org/downloads/release/python-385/) |
| Shodunke Oluwasefunmi | Ruby | |
| Semilogo Sonaike | PowerShell Script | powershell https://www.howtogeek.com/267858/how-to-install-microsoft-powershell-on-linux-or-os-x/ |
| Semilogo Sonaike | Python3 | Python 3.8(https://www.python.org/downloads/release/python-385/) |
To execute the scripts from this repository, a general script is provided that contains information on cloning the repository itself. Using git clone followed by the link to the repository allows you to clone. Upon cloning, it will provide command to change the directory from the current repository to the Team_Sanger Repository. To execute the scripts, you need to add rights to execute which can be achieved by chmod +x script. A for loop is provided that helps loop through each and every script and execute as per the commands within the loop.
Note: You need to install all the softwares listed above for the scripts to be executed. In case you bump into an error of bad interpreter when executing the scripts. Check the location of your executable using this example command as shown below:
# For example
which R
/usr/local/bin/R
which python3
/usr/local/bin/python3
which perl
/usr/local/bin/perl
which ruby
/usr/bin/ruby
which php
/usr/bin/php
# Remember your location may vary ! Whatever the location is just add it to the title.
On your terminal. Having found the path to either the compiler or interpreter then check the shebang (e.g #!/usr/local/bin/bash) of the individual script and edit it to suit your local machine.
The links provided under languages can be a quick way for you to download various softwares for you. Sanger_script.sh is for submission to our supervisors.