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implement Semantic Versioning
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willem-stock committed Aug 22, 2024
1 parent 77de2c7 commit 2cbbc99
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2 changes: 2 additions & 0 deletions scripts/main.sh
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source directory_list.txt #set to file containing directories

echo 'This is CONCOMPRA 0.0.1'

mkdir -p temporary/filteredPAFs
for file in *.fastq; do awk -v min=$MIN -v max=$MAX 'BEGIN {FS = "\t" ; OFS = "\n"} {header = $0 ; getline seq ; getline qheader ; getline qseq ; if (length(seq) >= min && length(seq) <= max) {print header, seq, qheader, qseq}}' < $file |tr -d " " > temporary/"$file" ; done
for file in *.fastq; do
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