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new figures from pmc; updated config and log
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actions-user committed Oct 1, 2024
1 parent 0bc8ccf commit 471b427
Showing 2 changed files with 23 additions and 1 deletion.
22 changes: 22 additions & 0 deletions figure_fetch.log
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@@ -500,3 +500,25 @@

2024-10-01 04:21:50 - ==========================================================

2024-10-01 05:17:50 - Starting NCBI PMC Figure Fetcher

2024-10-01 05:17:50 - Configuration loaded from query_config.yml

2024-10-01 05:17:50 - PMC search query: (((((((((((signaling pathway[Figure/Table Caption]) OR signalling pathway[Figure/Table Caption]) OR regulatory pathway[Figure/Table Caption]) OR disease pathway[Figure/Table Caption]) OR drug pathway[Figure/Table Caption]) OR metabolic pathway[Figure/Table Caption]) OR biosynthetic pathway[Figure/Table Caption]) OR synthesis pathway[Figure/Table Caption]) OR cancer pathway[Figure/Table Caption]) OR response pathway[Figure/Table Caption]) OR cycle pathway[Figure/Table Caption])) AND (2023/10/01[PUBDATE] : 2023/11/01[PUBDATE])

2024-10-01 05:18:20 - PMC search completed. Fetched 1025 results (max set to 3000).

2024-10-01 05:18:29 - Extracted 1693 figures from XML content.

2024-10-01 05:18:29 - Identified 460 pathway figures.

2024-10-01 05:18:29 - Skipped 460 figures previously processed.

2024-10-01 05:18:29 - Processed 0 pathway figures for download.

2024-10-01 05:18:29 - New pathway figures downloaded: 0

2024-10-01 05:18:29 - NCBI PMC Figure Fetcher completed

2024-10-01 05:18:29 - ==========================================================

2 changes: 1 addition & 1 deletion query_config.yml
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@@ -4,5 +4,5 @@ terms: (((((((((((signaling pathway[Figure/Table Caption]) OR signalling pathway
Caption]) OR biosynthetic pathway[Figure/Table Caption]) OR synthesis pathway[Figure/Table
Caption]) OR cancer pathway[Figure/Table Caption]) OR response pathway[Figure/Table
Caption]) OR cycle pathway[Figure/Table Caption]))
last_run: 2023/10/01
last_run: 2023/11/01
exclude_figids: prior_figid_results.tsv

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