Folder cellMatrixModel pertains to the paper Wershof et al. 2019.
Folder cellCellModel pertains to the paper Park et al. 2019.
Contact.cpp = Controls nature of collisions between fibroblasts CAT.cpp = Optional chemoattractant CC.cpp = Optional cancer cells. Fibrebox.cpp = matrix grid Node.cpp = Fibroblasts are made up of nodes TME.cpp = Tumour microenvironment Original1.cpp = Controlling output files. Launch ./Original1 to run code parametersToRead.txt = altering input parameters
Compile with g++ -o Original1 CAT.cpp CC.cpp Contact.cpp FibreBox.cpp Fibroblast.cpp Node.cpp Original1.cpp Parameter.cpp TME.cpp
TME.cpp: void TME::initialiseFibreBoxes() FibreBox(int xD, int yD, int boxD, int dominantIndexD, int dominantDensityD, int depRateD, int reRateD, int degRateD, int noBinsD, bool woundedD) IMT == ‘A’ | ’N’ | filename If IMT == ‘A’ | ’N’ then IMI is referenced (to figure out how much initial synthetic matrix to put down)
FibreBox.cpp FibreBox(int xD, int yD, int boxD, int dominantIndexD, int dominantDensityD, int depRateD, int reRateD, int degRateD, int noBinsD, bool woundedD)
[FILENAME]_fibrebox.txt Records: box, frame, x,y, orientation, density