This repository contains source code for the following paper:
Robust Histopathology Image Analysis: to Label or to Synthesize? Hou, Le and Agarwal, Ayush and Samaras, Dimitris and Kurc, Tahsin M and Gupta, Rajarsi R and Saltz, Joel H. Computer Vision and Pattern Recognition (CVPR), 2019
You need the following python2 libraries to run this software:
tensorflow
scipy
numpy
json
pickle
cv2
If you want to obtain initial synthetic images with nuclear masks, please read training-data-synthesis/README.md
If you want to train your nuclei segmentation model, or use our trained nuclei segmentation model, please read segmentation-of-nuclei/README.md
This software uses several open source repositories, especially:
https://github.com/carpedm20/simulated-unsupervised-tensorflow