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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 69 32

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 125 27

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 43 7

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 30 12

  5. presentations presentations Public

    A repository for public presentations

    TeX 5 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 6

Repositories

Showing 10 of 102 repositories
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    waldronlab/MicrobiomeBenchmarkDataAnalyses’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 23, 2024
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 2 0 2 0 Updated Sep 23, 2024
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 6 0 Updated Sep 23, 2024
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 43 6 10 3 Updated Sep 22, 2024
  • BugSigDBStats Public

    BugSigDB Stats and Analysis

    waldronlab/BugSigDBStats’s past year of commit activity
    HTML 1 3 6 1 Updated Sep 22, 2024
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    JavaScript 7 6 17 2 Updated Sep 22, 2024
  • MicrobiomeBenchmarkDataLefse Public

    Running lefse with lefse-conda, lefser, and microbiomeMarker

    waldronlab/MicrobiomeBenchmarkDataLefse’s past year of commit activity
    R 0 0 0 0 Updated Sep 20, 2024
  • VisiumIO Public

    Import spaceranger output and 10X spatial data

    waldronlab/VisiumIO’s past year of commit activity
    R 0 0 3 0 Updated Sep 19, 2024
  • TENxIO Public

    Bioconductor interface to 10X files

    waldronlab/TENxIO’s past year of commit activity
    R 0 0 3 0 Updated Sep 19, 2024
  • bioconductor Public template

    Docker container built on bioconductor/bioconductor_docker

    waldronlab/bioconductor’s past year of commit activity
    Shell 8 4 3 (1 issue needs help) 0 Updated Sep 17, 2024
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