Merge pull request #109 from volkamerlab/fix-docs-ci

Fix docs CI

.github/workflows/CI.yaml

@@ -131,36 +131,3 @@ jobs:
         shell: bash
         run: |
           flake8-nb --config setup.cfg docs/tutorials/*ipynb
-
-  docs:
-    runs-on: ubuntu-latest
-    env:
-      CI_OS: ubuntu-latest
-      PACKAGE: "kissim"
-      PYVER: "3.7"
-    steps:
-      - name: Checkout the code
-        uses: actions/checkout@v2
-      # More info on options: https://github.com/conda-incubator/setup-miniconda
-      - uses: conda-incubator/setup-miniconda@v2
-        with:
-          python-version: ${{ matrix.python-version }}
-          mamba-version: "*"
-          environment-file: devtools/conda-envs/test_env.yaml
-          channels: conda-forge,defaults,bioconda
-          activate-environment: test
-          auto-update-conda: true
-          auto-activate-base: false
-          show-channel-urls: true
-          # mamba-version: "*"
-      - name: Install package
-        shell: bash -l {0}
-        run: |
-          python -m pip install . --no-deps
-          conda list
-      - name: Run sphinx
-        shell: bash -l {0}
-        run: |
-          cd docs
-          make clean
-          SPHINXOPTS="-W -T --keep-going" make html

.github/workflows/docs.yaml

@@ -0,0 +1,50 @@
+name: Docs
+
+on:
+  push:
+    branches:
+      - "main"
+  pull_request:
+    branches:
+      - "main"
+  schedule:
+    # Run a cron job once weekly on Tuesday
+    - cron: "0 0 * * TUE"
+
+jobs:
+  docs:
+    name: Docs
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          python-version: "3.7"
+          mamba-version: "*"
+          activate-environment: test
+          channel-priority: true
+          environment-file: devtools/conda-envs/test_env.yaml
+          auto-activate-base: false
+
+      - name: Additional info about the build
+        shell: bash
+        run: |
+          uname -a
+          df -h
+          ulimit -a
+      - name: Install package
+        shell: bash -l {0}
+        run: |
+          pip install . --no-deps -vv
+      - name: Environment Information
+        shell: bash -l {0}
+        run: |
+          conda info --all
+          conda list
+      - name: Run Sphinx
+        shell: bash -l {0}
+        run: |
+          cd docs
+          make clean
+          SPHINXOPTS="-j2 -T --keep-going" make html

readthedocs.yml → .readthedocs.yaml

@@ -2,14 +2,13 @@
 
 version: 2
 
-build:
-  image: latest
+# Default
+formats: []
 
-python:
-  version: 3.8
-  install:
-    - method: pip
-      path: .
+build:
+  os: "ubuntu-20.04"
+  tools:
+    python: "mambaforge-4.10"
 
 conda:
   environment: devtools/conda-envs/test_env.yaml