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@vivarium-collective

Vivarium Collective

home of the vivarium core engine and project ecosystem

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  1. vivarium-core vivarium-core Public

    Core Interface and Engine for Vivarium

    Python 26 3

  2. bigraph-schema bigraph-schema Public

    compositional type schemas

    Python 1 2

  3. process-bigraph process-bigraph Public

    Jupyter Notebook 2 2

  4. bigraph-viz bigraph-viz Public

    visualization tool for bigraph schema

    Jupyter Notebook 1

  5. biosimulator-processes biosimulator-processes Public

    Core implementations of simulator processes using the process-bigraph Process API

    Jupyter Notebook 1 1

Repositories

Showing 10 of 45 repositories
  • vivarium-collective.github.io Public
    vivarium-collective/vivarium-collective.github.io’s past year of commit activity
    HTML 0 0 1 0 Updated Jan 12, 2025
  • process-bigraph Public
    vivarium-collective/process-bigraph’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 2 30 0 Updated Jan 11, 2025
  • bigraph-viz Public

    visualization tool for bigraph schema

    vivarium-collective/bigraph-viz’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 1 0 0 Updated Jan 11, 2025
  • vivarium-interface Public

    Vivarium Interface for Process-Bigraphs

    vivarium-collective/vivarium-interface’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 10, 2025
  • cdFBA Public

    Community Dynamic Flux Balance Analysis using process-bigraph

    vivarium-collective/cdFBA’s past year of commit activity
    Python 0 0 0 1 Updated Jan 9, 2025
  • biosimulator-processes Public

    Core implementations of simulator processes using the process-bigraph Process API

    vivarium-collective/biosimulator-processes’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 0 1 Updated Jan 9, 2025
  • multicell-schema Public
    vivarium-collective/multicell-schema’s past year of commit activity
    Python 1 0 1 0 Updated Jan 7, 2025
  • bigraph-schema Public

    compositional type schemas

    vivarium-collective/bigraph-schema’s past year of commit activity
    Python 1 Apache-2.0 2 34 0 Updated Dec 21, 2024
  • spatio-flux Public

    spatio-temporal fba for process-bigraphs

    vivarium-collective/spatio-flux’s past year of commit activity
    Python 1 1 1 0 Updated Dec 13, 2024
  • RashmiRotationProject---Microbial-Metabolic-Modeling-and-Analysis Public
    vivarium-collective/RashmiRotationProject---Microbial-Metabolic-Modeling-and-Analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 5, 2024
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