Merge pull request #28 from cancogen-virus-seq/ap_and_pos_to_list

Update consensus_sequence.json
virusseq · Jul 18, 2022 · acf87cd · acf87cd
2 parents d2b115b + 2386e96
commit acf87cd
Showing 1 changed file with 72 additions and 64 deletions.
diff --git a/schemas/consensus_sequence.json b/schemas/consensus_sequence.json
@@ -249,38 +249,42 @@
             ]
           },
           "anatomical_part": {
-            "enum": [
-              "Alveolar sac",
-              "Anterior Nares",
-              "Anus",
-              "Bronchiole",
-              "Bronchus",
-              "Buccal mucosa",
-              "Duodenum",
-              "Esophagus",
-              "Ethmoid sinus",
-              "Eye",
-              "Inferior Nasal Turbinate",
-              "Intestine",
-              "Lower respiratory tract",
-              "Lung",
-              "Middle Nasal Turbinate",
-              "Nasal Cavity",
-              "Nasopharynx (NP)",
-              "Oropharynx (OP)",
-              "Pleural cavity",
-              "Pleural sac",
-              "Rectum",
-              "Skin",
-              "Stomach",
-              "Trachea",
-              "Upper respiratory tract",
-              "Not Applicable",
-              "Missing",
-              "Not Collected",
-              "Not Provided",
-              "Restricted Access"
-            ]
+            "type":"array",
+            "items":{
+              "type":"string",
+              "enum": [
+                "Alveolar sac",
+                "Anterior Nares",
+                "Anus",
+                "Bronchiole",
+                "Bronchus",
+                "Buccal mucosa",
+                "Duodenum",
+                "Esophagus",
+                "Ethmoid sinus",
+                "Eye",
+                "Inferior Nasal Turbinate",
+                "Intestine",
+                "Lower respiratory tract",
+                "Lung",
+                "Middle Nasal Turbinate",
+                "Nasal Cavity",
+                "Nasopharynx (NP)",
+                "Oropharynx (OP)",
+                "Pleural cavity",
+                "Pleural sac",
+                "Rectum",
+                "Skin",
+                "Stomach",
+                "Trachea",
+                "Upper respiratory tract",
+                "Not Applicable",
+                "Missing",
+                "Not Collected",
+                "Not Provided",
+                "Restricted Access"
+              ]
+            }
           },
           "body_product": {
             "enum": [
@@ -917,38 +921,42 @@
         ],
         "properties": {
           "purpose_of_sequencing": {
-            "enum": [
-              "Baseline surveillance (random sampling)",
-              "Cluster/Outbreak investigation",
-              "Domestic travel surveillance",
-              "International travel surveillance",
-              "Interstate/ interprovincial travel surveillance",
-              "Intra-jurisdictional outbreak investigation",
-              "Intra-state/ intra-provincial travel surveillance",
-              "Longitudinal surveillance (repeat sampling of individuals)",
-              "Multi-jurisdictional outbreak investigation",
-              "Priority surveillance project",
-              "Protocol testing experiment",
-              "Re-infection surveillance",
-              "Research",
-              "Retrospective sequencing",
-              "Sample has epidemiological link to Omicron Variant",
-              "Sample has epidemiological link to Variant of Concern (VoC)",
-              "Screening for Variants of Concern (VoC)",
-              "Surveillance from international worker testing",
-              "Surveillance of international border crossing by air travel or ground transport",
-              "Surveillance of international border crossing by air travel",
-              "Surveillance of international border crossing by ground transport",
-              "Targeted surveillance (non-random sampling)",
-              "Travel-associated surveillance",
-              "Vaccine escape surveillance",
-              "Viral passage experiment",
-              "Not Applicable",
-              "Missing",
-              "Not Collected",
-              "Not Provided",
-              "Restricted Access"
-            ]
+            "type":"array",
+            "items":{
+              "type":"string",
+              "enum": [
+                "Baseline surveillance (random sampling)",
+                "Cluster/Outbreak investigation",
+                "Domestic travel surveillance",
+                "International travel surveillance",
+                "Interstate/ interprovincial travel surveillance",
+                "Intra-jurisdictional outbreak investigation",
+                "Intra-state/ intra-provincial travel surveillance",
+                "Longitudinal surveillance (repeat sampling of individuals)",
+                "Multi-jurisdictional outbreak investigation",
+                "Priority surveillance project",
+                "Protocol testing experiment",
+                "Re-infection surveillance",
+                "Research",
+                "Retrospective sequencing",
+                "Sample has epidemiological link to Omicron Variant",
+                "Sample has epidemiological link to Variant of Concern (VoC)",
+                "Screening for Variants of Concern (VoC)",
+                "Surveillance from international worker testing",
+                "Surveillance of international border crossing by air travel or ground transport",
+                "Surveillance of international border crossing by air travel",
+                "Surveillance of international border crossing by ground transport",
+                "Targeted surveillance (non-random sampling)",
+                "Travel-associated surveillance",
+                "Vaccine escape surveillance",
+                "Viral passage experiment",
+                "Not Applicable",
+                "Missing",
+                "Not Collected",
+                "Not Provided",
+                "Restricted Access"
+              ]
+            }
           },
           "purpose_of_sequencing_details": {
             "type": [