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@virtool

Virtool

Viral infection diagnostics using next-generation sequencing

Getting Started

See the Virtool documentation to get started with the latest version of Virtool 4.

Versions

Virtool is currently undergoing a major transformation into a cloud-native application. This will mean Virtool can scale work across multiple hosts and run natively in Kubernetes and public cloud providers.

Virtool 4 series should be used for now. This version will continue to receive bug and security fixes for the forseeable future.

Virtool 5 and later will comprise multiple containerized services that need to run together. A deployment and migration guide will be provided.

Support

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  1. virtool Public

    Viral infection diagnostics using next-generation sequencing

    Python 43 23

  2. virtool-ui Public

    The browser frontend for Virtool

    TypeScript 4 7

  3. virtool-workflow Public

    A framework for building Virtool workflows

    Python 3 10

  4. virtool-core Public

    Core utilities for Virtool and associated packages

    Python 3 9

Repositories

Showing 10 of 33 repositories
  • ref-builder Public

    Build and maintain reference sets of pathogen genome sequences.

    Python 2 1 0 2 Updated Mar 22, 2025
  • ref-plant-viruses Public

    An official Virtool reference for plant viruses

    1 MIT 3 5 0 Updated Mar 21, 2025
  • virtool-ui Public

    The browser frontend for Virtool

    TypeScript 4 7 0 0 Updated Mar 19, 2025
  • ml-plant-viruses Public

    A machine learning model for detecting plant viruses.

    1 0 0 0 Updated Mar 17, 2025
  • workflow-iimi Public

    A workflow for detecting known viruses using ML in Virtool

    Python 2 2 0 0 Updated Mar 17, 2025
  • iimi Public

    Virus diagnostics using machine learning

    R 2 2 1 1 Updated Mar 6, 2025
  • dev Public

    Developer tooling for Virtool.

    Starlark 2 4 0 0 Updated Mar 6, 2025
  • virtool-workflow Public

    A framework for building Virtool workflows

    Python 3 MIT 10 0 0 Updated Feb 21, 2025
  • virtool-core Public

    Core utilities for Virtool and associated packages

    Python 3 MIT 9 0 0 Updated Feb 21, 2025
  • virtool Public

    Viral infection diagnostics using next-generation sequencing

    Python 43 MIT 23 8 2 Updated Jan 21, 2025