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GET_PHYLOMARKERS_v1.3.2_2021-09-18
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@vinuesa vinuesa released this 18 Sep 02:55
· 290 commits to master since this release
v1.3.2
35225c5

GET_PHYLOMARKERS_v1.3.2_2021-09-18

This release (2021-09-18) contains several important updates and bug fixes

  • packages and runs the latest FastTree (v2.1.11.) and IQ-Tree (v2.1.3) 64-bit Linux binaries
  • contains a Dockerfile used to build the Docker image ready to pull from Docker Hub
  • the release bundles a new versions of: run_get_phylomarkers_pipeline.sh, estimate_pangenome_phylogenies.sh, hcluster_pangenome_matrix.sh, install_R_deps.R
  • new scripts included in the release for convenient testing: run_test_suite.sh, run_make_tests.sh
  • Updated documentation and tutorial materials, both in Markdown and HTML formats
  • CI with 21 tests implemented in test_get_phylomarkers.t, deployed using Travis CI
  • run_get_phylomarkers_pipeline.sh issues a warning, instead of dying if the kdetree test could not be run due to installation issues with the kdetrees R package
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