Updating generated outputs

vincentvialard · Jun 30, 2021 · e36c05f · e36c05f
1 parent fef143b
commit e36c05f
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diff --git a/docs/ClassDefinition.html b/docs/ClassDefinition.html
@@ -296,6 +296,21 @@ <h2 id="other-properties">Other properties</h2>
 <td></td>
 <td>template</td>
 </tr>
+<tr>
+<td></td>
+<td></td>
+<td>message</td>
+</tr>
+<tr>
+<td></td>
+<td></td>
+<td>observation</td>
+</tr>
+<tr>
+<td><strong>Close Mappings:</strong></td>
+<td></td>
+<td>owl:Class</td>
+</tr>
 </tbody>
 </table>
 

diff --git a/docs/SlotDefinition.html b/docs/SlotDefinition.html
@@ -431,6 +431,21 @@ <h2 id="other-properties">Other properties</h2>
 <td></td>
 <td>attribute</td>
 </tr>
+<tr>
+<td></td>
+<td></td>
+<td>column</td>
+</tr>
+<tr>
+<td></td>
+<td></td>
+<td>variable</td>
+</tr>
+<tr>
+<td><strong>Close Mappings:</strong></td>
+<td></td>
+<td>rdf:Property</td>
+</tr>
 </tbody>
 </table>
 

diff --git a/docs/index.html b/docs/index.html
@@ -378,5 +378,5 @@ <h4 id="defined">Defined</h4>
 
 <!--
 MkDocs version : 1.2.1
-Build Date UTC : 2021-06-30 16:53:52.752975+00:00
+Build Date UTC : 2021-06-30 17:04:06.914227+00:00
 -->
diff --git a/docs/search/search_index.json b/docs/search/search_index.json
diff --git a/docs/sitemap.xml.gz b/docs/sitemap.xml.gz
diff --git a/linkml_model/annotations.py b/linkml_model/annotations.py
@@ -1,5 +1,5 @@
 # Auto generated from annotations.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-06-30 16:54
+# Generation date: 2021-06-30 17:04
 # Schema: annotations
 #
 # id: https://w3id.org/linkml/annotations

diff --git a/linkml_model/extensions.py b/linkml_model/extensions.py
@@ -1,5 +1,5 @@
 # Auto generated from extensions.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-06-30 16:54
+# Generation date: 2021-06-30 17:04
 # Schema: extensions
 #
 # id: https://w3id.org/linkml/extensions

diff --git a/linkml_model/json/annotations.json b/linkml_model/json/annotations.json
@@ -316,9 +316,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "annotations.yaml",
-  "source_file_date": "Wed Jun 30 16:52:30 2021",
+  "source_file_date": "Wed Jun 30 17:02:39 2021",
   "source_file_size": 833,
-  "generation_date": "2021-06-30 16:53",
+  "generation_date": "2021-06-30 17:04",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",

diff --git a/linkml_model/json/extensions.json b/linkml_model/json/extensions.json
@@ -260,9 +260,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "extensions.yaml",
-  "source_file_date": "Wed Jun 30 16:52:30 2021",
+  "source_file_date": "Wed Jun 30 17:02:39 2021",
   "source_file_size": 1043,
-  "generation_date": "2021-06-30 16:53",
+  "generation_date": "2021-06-30 17:04",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",

diff --git a/linkml_model/json/mappings.json b/linkml_model/json/mappings.json
@@ -311,9 +311,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "mappings.yaml",
-  "source_file_date": "Wed Jun 30 16:52:30 2021",
+  "source_file_date": "Wed Jun 30 17:02:39 2021",
   "source_file_size": 2656,
-  "generation_date": "2021-06-30 16:53",
+  "generation_date": "2021-06-30 17:04",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",

diff --git a/linkml_model/json/meta.json b/linkml_model/json/meta.json
@@ -2738,10 +2738,15 @@
         "slot",
         "field",
         "property",
-        "attribute"
+        "attribute",
+        "column",
+        "variable"
       ],
       "description": "the definition of a property or a slot",
       "from_schema": "https://w3id.org/linkml/meta",
+      "close_mappings": [
+        "rdf:Property"
+      ],
       "is_a": "Definition",
       "slots": [
         "name",
@@ -2820,10 +2825,15 @@
       "aliases": [
         "table",
         "record",
-        "template"
+        "template",
+        "message",
+        "observation"
       ],
       "description": "the definition of a class or interface",
       "from_schema": "https://w3id.org/linkml/meta",
+      "close_mappings": [
+        "owl:Class"
+      ],
       "is_a": "Definition",
       "slots": [
         "name",
@@ -3048,9 +3058,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "meta.yaml",
-  "source_file_date": "Wed Jun 30 16:52:30 2021",
-  "source_file_size": 34128,
-  "generation_date": "2021-06-30 16:53",
+  "source_file_date": "Wed Jun 30 17:02:39 2021",
+  "source_file_size": 34275,
+  "generation_date": "2021-06-30 17:04",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",

diff --git a/linkml_model/json/types.json b/linkml_model/json/types.json
@@ -169,9 +169,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "types.yaml",
-  "source_file_date": "Wed Jun 30 16:52:30 2021",
+  "source_file_date": "Wed Jun 30 17:02:39 2021",
   "source_file_size": 2676,
-  "generation_date": "2021-06-30 16:53",
+  "generation_date": "2021-06-30 17:04",
   "@type": "SchemaDefinition",
   "@context": [
     {

diff --git a/linkml_model/jsonld/annotations.context.jsonld b/linkml_model/jsonld/annotations.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",

diff --git a/linkml_model/jsonld/annotations.model.context.jsonld b/linkml_model/jsonld/annotations.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from annotations.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: annotations\n    \n    id: https://w3id.org/linkml/annotations\n    description: Annotations mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",

diff --git a/linkml_model/jsonld/context.jsonld b/linkml_model/jsonld/context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:53\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",

diff --git a/linkml_model/jsonld/extensions.context.jsonld b/linkml_model/jsonld/extensions.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",

diff --git a/linkml_model/jsonld/extensions.model.context.jsonld b/linkml_model/jsonld/extensions.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from extensions.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: extensions\n    \n    id: https://w3id.org/linkml/extensions\n    description: Extension mixin\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "@vocab": "https://w3id.org/linkml/",

diff --git a/linkml_model/jsonld/mappings.context.jsonld b/linkml_model/jsonld/mappings.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",

diff --git a/linkml_model/jsonld/mappings.model.context.jsonld b/linkml_model/jsonld/mappings.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from mappings.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: mappings\n    \n    id: https://w3id.org/linkml/mappings\n    description: LinkML model for mappings\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",

diff --git a/linkml_model/jsonld/meta.context.jsonld b/linkml_model/jsonld/meta.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:53\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",

diff --git a/linkml_model/jsonld/meta.model.context.jsonld b/linkml_model/jsonld/meta.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from meta.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: meta\n    \n    id: https://w3id.org/linkml/meta\n    description: A metamodel for defining linked open data schemas\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "IAO": {
          "@id": "http://purl.obolibrary.org/obo/IAO_",

diff --git a/linkml_model/jsonld/types.context.jsonld b/linkml_model/jsonld/types.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:53\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "shex": "http://www.w3.org/ns/shex#",

diff --git a/linkml_model/jsonld/types.model.context.jsonld b/linkml_model/jsonld/types.model.context.jsonld
@@ -1,5 +1,5 @@
 {
-   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 16:54\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
+   "_comments": "Auto generated from types.yaml by jsonldcontextgen.py version: 0.1.1\n    Generation date: 2021-06-30 17:04\n    Schema: types\n    \n    id: https://w3id.org/linkml/types\n    description: Shared type definitions for the core LinkML mode and metamodel\n    license: https://creativecommons.org/publicdomain/zero/1.0/\n    ",
    "@context": {
       "linkml": "https://w3id.org/linkml/",
       "shex": "http://www.w3.org/ns/shex#",

diff --git a/linkml_model/mappings.py b/linkml_model/mappings.py
@@ -1,5 +1,5 @@
 # Auto generated from mappings.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-06-30 16:54
+# Generation date: 2021-06-30 17:04
 # Schema: mappings
 #
 # id: https://w3id.org/linkml/mappings

diff --git a/linkml_model/meta.py b/linkml_model/meta.py
@@ -1,5 +1,5 @@
 # Auto generated from meta.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-06-30 16:54
+# Generation date: 2021-06-30 17:04
 # Schema: meta
 #
 # id: https://w3id.org/linkml/meta

diff --git a/linkml_model/model/schema/meta.yaml b/linkml_model/model/schema/meta.yaml
@@ -77,7 +77,14 @@ slots:
     multivalued: true
     range: ncname
     description: >-
-      the identifier of this class or slot must begin with one of the URIs referenced by this prefix
+      the identifier of this class or slot must begin with the URIs referenced by this prefix
+    comments:
+      - Order of elements may be used to indicate priority order
+      - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open)
+      - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open)
+    see_also:
+      - https://github.com/linkml/linkml/issues/194
+      - https://github.com/linkml/linkml-model/issues/28
 
   description:
     domain: element
@@ -1052,7 +1059,11 @@ classes:
       - field
       - property
       - attribute
+      - column
+      - variable
     is_a: definition
+    close_mappings:
+      - rdf:Property
     slots:
       - singular_name
       - domain
@@ -1096,6 +1107,8 @@ classes:
       - table
       - record
       - template
+      - message
+      - observation
     is_a: definition
     slots:
       - slots
@@ -1113,6 +1126,8 @@ classes:
         range: class_definition
       apply_to:
         range: class_definition
+    close_mappings:
+      - owl:Class
 
   prefix:
     description: prefix URI tuple