Merge pull request linkml#141 from linkml/reorg

reorganized documentation infrastructure. Regenerated HTML.
vincentvialard · Jan 19, 2023 · b8953ba · b8953ba
2 parents 3fb67c7 + 40fd6ef
commit b8953ba
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Showing 74 changed files with 3,122 additions and 2,848 deletions.
diff --git a/Makefile b/Makefile
@@ -82,7 +82,7 @@ $(DOCDIR):
 	mkdir -p $@
 
 gendoc: $(DOCDIR)
-	cp linkml_model/model/docs/*md $(DOCDIR) ; \
+	cp -pr linkml_model/model/docs/ $(DOCDIR) ; \
 	$(RUN) gen-doc --genmeta --sort-by rank -d $(DOCDIR) $(SOURCE_SCHEMA_PATH)
 
 testdoc: gendoc serve

diff --git a/docs/00preamble/index.html b/docs/00preamble/index.html
@@ -9,21 +9,22 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
 
 
 
         <title>Linked Data Modeling Language: Specification - LinkML Model</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
 
 
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
 
 
 
+
 
 
 
@@ -36,12 +37,13 @@
 
 
 
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 
 
 
 
 
+
   </head>
 
 
@@ -108,6 +110,7 @@
 
 
 
+
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
 
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
 
 
 
+
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
 
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
 
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
 
 
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
 
@@ -591,10 +595,11 @@
               </div>
 
 
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-
+
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
 
+
 
 
 <h1 id="linked-data-modeling-language-specification">Linked Data Modeling Language: Specification</h1>
@@ -615,10 +620,15 @@ <h3 id="status-of-this-specification">Status of this specification</h3>
 <h3 id="license">License</h3>
 <p>This specification, like all parts of LinkML are in the public domain under a Creative Commons Zero license waiver.</p>
 
-
-            </article>
-
-          </div>
+
+
+
+
+
+              </article>
+            </div>
+
+
         </div>
 
       </main>
@@ -645,11 +655,13 @@ <h3 id="license">License</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
 
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
 
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
 
 
+
   </body>
 </html>
diff --git a/docs/01introduction/index.html b/docs/01introduction/index.html
@@ -9,21 +9,22 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
 
 
 
         <title>Introduction - LinkML Model</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
 
 
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
 
 
 
+
 
 
 
@@ -36,12 +37,13 @@
 
 
 
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 
 
 
 
 
+
   </head>
 
 
@@ -108,6 +110,7 @@
 
 
 
+
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
 
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
 
 
 
+
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
 
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
 
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
 
 
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
 
@@ -633,10 +637,11 @@
               </div>
 
 
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-
+
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
 
+
 
 
 <h1 id="introduction">Introduction</h1>
@@ -714,10 +719,15 @@ <h3 id="part-6-mapping-of-instance-data">Part 6: Mapping of Instance Data</h3>
 <li>RDF and JSON-LD</li>
 </ul>
 
-
-            </article>
-
-          </div>
+
+
+
+
+
+              </article>
+            </div>
+
+
         </div>
 
       </main>
@@ -744,11 +754,13 @@ <h3 id="part-6-mapping-of-instance-data">Part 6: Mapping of Instance Data</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
 
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
 
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
 
 
+
   </body>
 </html>
diff --git a/docs/02instances/index.html b/docs/02instances/index.html
@@ -6,14 +6,14 @@
 <meta charset="utf-8"/>
 <meta content="width=device-width,initial-scale=1" name="viewport"/>
 <link href="../assets/images/favicon.png" rel="icon"/>
-<meta content="mkdocs-1.3.1, mkdocs-material-8.3.9" name="generator"/>
+<meta content="mkdocs-1.4.2, mkdocs-material-8.5.10" name="generator"/>
 <title>LinkML Instances - LinkML Model</title>
-<link href="../assets/stylesheets/main.1d29e8d0.min.css" rel="stylesheet"/>
-<link href="../assets/stylesheets/palette.cbb835fc.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/main.975780f9.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/palette.2505c338.min.css" rel="stylesheet"/>
 <link crossorigin="" href="https://fonts.gstatic.com" rel="preconnect"/>
 <link href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&amp;display=fallback" rel="stylesheet"/>
 <style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
-<script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+<script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 </head>
 <body data-md-color-accent="amber" data-md-color-primary="teal" data-md-color-scheme="default" dir="ltr">
 <script>var palette=__md_get("__palette");if(palette&&"object"==typeof palette.color)for(var key of Object.keys(palette.color))document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
@@ -74,7 +74,7 @@
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12Z"></path></svg>
 </label>
 <nav aria-label="Search" class="md-search__options">
-<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" type="reset">
+<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" title="Clear" type="reset">
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"></path></svg>
 </button>
 </nav>
@@ -207,8 +207,8 @@
       </a>
 </li>
 <li class="md-nav__item">
-<a class="md-nav__link" href="../SpecificationProfile.md">
-        SpecificationProfile
+<a class="md-nav__link" href="../SpecificationSubset/">
+        SpecificationSubset
       </a>
 </li>
 <li class="md-nav__item">
@@ -588,7 +588,7 @@ <h2 id="instance-accessor-syntax">Instance Accessor Syntax</h2>
 <div class="md-dialog" data-md-component="dialog">
 <div class="md-dialog__inner md-typeset"></div>
 </div>
-<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
-<script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
+<script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
 <script src="https://unpkg.com/[email protected]/dist/mermaid.min.js"></script><script>mermaid.initialize({});</script></body>
 </html>