GitHub - vincentrose88/QCscript: QCscript for automatically interactive QC for illumina final report matrix, using plink for coarse QC

vincentrose88 / QCscript Public

QCscript for automatically interactive QC for illumina final report matrix, using plink for coarse QC

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
EGT.py		EGT.py
Ilumni_update_allele_script.py		Ilumni_update_allele_script.py
QCpython.py		QCpython.py
Rmafinbreed.R		Rmafinbreed.R
Rmiss.R		Rmiss.R
Rpcaforsat.R		Rpcaforsat.R
aimscript.sh		aimscript.sh
calcMeanSD.py		calcMeanSD.py
calibrateZ.py		calibrateZ.py
calibrateZ95.py		calibrateZ95.py
convertReportToTPED.py		convertReportToTPED.py
display_inbreed.sh		display_inbreed.sh
dropSamplesFromReport.py		dropSamplesFromReport.py
dropSamplesFromReport_FasterVersion.py		dropSamplesFromReport_FasterVersion.py
eigenstratPlink.r		eigenstratPlink.r
findBetas.r		findBetas.r
findMeanSD.py		findMeanSD.py
findThresholds.py		findThresholds.py
ibd.r		ibd.r
mafauto.sh		mafauto.sh
qcscript.R		qcscript.R
raimnodu.sh		raimnodu.sh
startThresholdBashCluster.sh		startThresholdBashCluster.sh
thresholdBashCluster.sh		thresholdBashCluster.sh
zCall.py		zCall.py