explicitly set aws profile

viash-io · Jun 17, 2024 · bc6f3fb · bc6f3fb
1 parent 7e96b4c
commit bc6f3fb
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diff --git a/scripts/run_batch-code_remote-input_s3-output_s3-work_s3-fusion.sh b/scripts/run_batch-code_remote-input_s3-output_s3-work_s3-fusion.sh
@@ -9,6 +9,10 @@ RES=s3://data-intuitive-tmp/test-nextflow-wave-fusion/resources
 WORK=s3://data-intuitive-tmp/test-nextflow-wave-fusion/work/${script_name%.sh}
 NXF_CONFIG=/tmp/${script_name%.sh}.config
 
+# set aws profile
+export AWS_PROFILE=di
+echo "aws profile: $AWS_PROFILE"
+
 # clear output dir
 echo "Clearing output directory"
 aws s3 rm $TMPOUT --recursive

diff --git a/scripts/run_batch-code_remote-input_s3-output_s3-work_s3.sh b/scripts/run_batch-code_remote-input_s3-output_s3-work_s3.sh
@@ -9,6 +9,10 @@ RES=s3://data-intuitive-tmp/test-nextflow-wave-fusion/resources
 WORK=s3://data-intuitive-tmp/test-nextflow-wave-fusion/work/${script_name%.sh}
 NXF_CONFIG=/tmp/${script_name%.sh}.config
 
+# set aws profile
+export AWS_PROFILE=di
+echo "aws profile: $AWS_PROFILE"
+
 # clear output dir
 echo "Clearing output directory"
 aws s3 rm $TMPOUT --recursive

diff --git a/scripts/run_local-code_local-input_s3-output_s3-work_local.sh b/scripts/run_local-code_local-input_s3-output_s3-work_local.sh
@@ -7,6 +7,10 @@ TMPOUT=s3://data-intuitive-tmp/test-nextflow-wave-fusion/output/${script_name%.s
 OUT=output/${script_name%.sh}
 RES=s3://data-intuitive-tmp/test-nextflow-wave-fusion/resources
 
+# set aws profile
+export AWS_PROFILE=di
+echo "aws profile: $AWS_PROFILE"
+
 # clear output dir
 echo "Clearing output directory"
 aws s3 rm $TMPOUT --recursive

diff --git a/scripts/run_local-code_remote-input_s3-output_local-work_local.sh b/scripts/run_local-code_remote-input_s3-output_local-work_local.sh
@@ -6,6 +6,10 @@ script_name=$(basename "$0")
 OUT=output/${script_name%.sh}
 RES=s3://data-intuitive-tmp/test-nextflow-wave-fusion/resources
 
+# set aws profile
+export AWS_PROFILE=di
+echo "aws profile: $AWS_PROFILE"
+
 # clear output dir
 [ -d "$OUT" ] && rm -r "$OUT"
 

diff --git a/scripts/run_local-code_remote-input_s3-output_s3-work_local.sh b/scripts/run_local-code_remote-input_s3-output_s3-work_local.sh
@@ -7,6 +7,10 @@ TMPOUT=s3://data-intuitive-tmp/test-nextflow-wave-fusion/output/${script_name%.s
 OUT=output/${script_name%.sh}
 RES=s3://data-intuitive-tmp/test-nextflow-wave-fusion/resources
 
+# set aws profile
+export AWS_PROFILE=di
+echo "aws profile: $AWS_PROFILE"
+
 # clear output dir
 echo "Clearing output directory"
 aws s3 rm $TMPOUT --recursive