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Mutation separation #651

Merged
merged 4 commits into from
Jul 29, 2024
Merged

Mutation separation #651

merged 4 commits into from
Jul 29, 2024

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atc3
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@atc3 atc3 commented Jul 29, 2024

In the CSV data files themselves:

  • Multiple deletions will be split up into single deletions
    • ∆HV69 → ∆H69, ∆V70
  • Mutations will be “ungrouped” if possible
    • FR157SG → F157S, R158G
  • Add positions_affected columns to data_complete.csv file, for easier searching of positions affected by mutations
    • For example, for sequence containing LPPA24S, positions 24, 25, 26, 27 are added to a list in a separate column.

On the website (UI changes only)

  • Large mutations with coupled insertions/mutations (where the mutation site is not obvious) will be labeled with the position range rather than a simple position
    • LPPA24S → LPPA24/27S

@atc3 atc3 added UI User Interface data python Pull requests that update Python code javascript Pull requests that update Javascript code labels Jul 29, 2024
@atc3 atc3 merged commit cd329ec into master Jul 29, 2024
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@atc3 atc3 deleted the mutation-separation branch July 29, 2024 17:22
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