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vector-engineering / covidcg Public

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Metadata and filter for N subtype in flu#650

Merged

atc3 merged 14 commits intomastervector-engineering/covidcg:masterfrom n-type-filtervector-engineering/covidcg:n-type-filterCopy head branch name to clipboard

Jul 28, 2024

+75-32

Conversation Commits14 (14)Checks Files changed

Commits

Commits on May 16, 2024

remove unused example_data_folder
atc3
committed
Adjust local data directory names
atc3
committed

Commits on May 19, 2024

add dev commands
atc3
committed
fix typo
atc3
committed
Add n subtype metadata col to config
atc3
committed
Extract N subtype from flu gisaid workflow
atc3
committed

Commits on May 23, 2024

Reduce local dev environment data
atc3
committed
Use local config file for dev environment
atc3
committed
Merge branch 'master' into n-type-filter
atc3
committed

Commits on Jul 28, 2024

Merge branch 'master' into n-type-filter
atc3
committed
Adjust flu dev environment, make coverage seeding a bit more robust to sparse dev environment data
atc3
committed
Pass selected group filter to metadata query
atc3
committed
Add N subtype in flu genbank workflow
atc3
committed
Pass fasta input files to manifest job to automatically trigger job - also add sequence manifest re-triggering to example commands to make sure this step isn't skipped
atc3
committed

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