Hotfix - explicitly read latin-1 encoding from fasta files #637
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
atc3
added
bug
atc3
added a commit
that referenced
this pull request
Jan 27, 2024
atc3
added a commit
that referenced
this pull request
Feb 24, 2024
* Restrict spikenuc processing to sars2 * Bump version to v2.7.4-flu-rc1 * Add missing description, fix Darwin/6 description * Add A-Viet-Nam-1203-2004 H5 reference * Add missing H5 HA alignment * Update default H5 reference * Bump to v2.7.4-flu-rc2 * Multithreaded and much more efficient flu ingest * Change loading logo depending on site * Add more metadata columns * Add About page for Flu site (close #600) * Bump version to v2.7.4-flu-rc3 * Fix extra metadata col * Remove duplicate metadata cols * Bump version to v2.7.4-flu-rc4 * Finalize flu update, bump to v2.7.4 * Bugfix: adapt to new accession ID format in sequence file * Add explicit status file for sequence chunking * cherry pick #637 latin encoding hotfix * Formatting * More verbose table writing * Try writing concurrent indices -- we won't be writing anymore anyway so we don't need the lock * Prettier printing * Skip pushing mutation frequencies for references/groups with no data * Fix data paths
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.