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PANGO annotations for SARS2 GISAID workflow #631

Merged
merged 14 commits into from
Oct 31, 2023
Merged

PANGO annotations for SARS2 GISAID workflow #631

merged 14 commits into from
Oct 31, 2023

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@atc3 atc3 commented Aug 22, 2023

  • Add PANGO annotations, in place of GISAID's own annotations
  • Rename GISAID's annotations to "gisaid_lineage", and preferentially use our own PANGO lineage designations

Any missing designations from our own annotations will be backfilled with GISAID's calls.

@atc3 atc3 added data python Pull requests that update Python code labels Aug 22, 2023
@atc3 atc3 merged commit f039ad2 into master Oct 31, 2023
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@atc3 atc3 deleted the gisaid-pango branch October 31, 2023 01:21
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