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vecerkovakaterina/README.md

About Me

Hey there! I'm Kateřina, and I'm a bioinformatician based at the Laboratory of Genomics and Bioinformatics of the Institute of Molecular Genetics 🧬.

💡 Skills & Interests

  • Bioinformatics
  • Genomics
  • Transcriptomics

🚀 Currently learning

  • Long-read transcriptomics
  • Single-Cell Analysis
  • Creating an agent with locally running open-source LLMs
  • Spatial Transcriptomics

👩‍🔬 Day Job

I work at the Sequencing and Bioinformatics Core Facility of the Institute of Molecular Genetics, where I do bioinformatic analysis as a service for other research groups. What I love about my job is that I encouter various biological experiments, I get to use so many different tools for the analysis and I'm learning a lot 🧙‍♀️.

🎓 Teaching

In addition to my research, I teach practicals for the courses Essential Bioinformatics and Statistical Data Analysis at the University of Chemistry and Technology, Prague.

🔬 PhD Pursuits

At the same time, I'm working on my PhD, where I'm developing a tool that would search for hidden genes 💎.

Popular repositories Loading

  1. llm_bioinfo_agent llm_bioinfo_agent Public

    Python 1

  2. statistical_data_analysis_in_R statistical_data_analysis_in_R Public

    Teaching materials for advanced exercises for the Master's course Statistical Data Analysis at the University of Chemical Technology in Prague

    HTML 1

  3. hidden-genes-msc hidden-genes-msc Public

    Diploma thesis: This project provides an automated approach for searching for hidden genes in vertebrate genomes.

    Jupyter Notebook

  4. nucleic-acids-internal-coordinates-python nucleic-acids-internal-coordinates-python Public

    Bachelor thesis: Python module for computation of internal coordinates in DNA and RNA.

    Python

  5. nucleic-acids-internal-coordinates-c nucleic-acids-internal-coordinates-c Public

    Bachelor thesis: C source code for computation of internal coordinates in DNA and RNA.

    C

  6. biohackathon-europe-2023 biohackathon-europe-2023 Public

    Forked from elixir-europe/biohackathon-europe-2023

    For the BioHackathon Europe 2023 website.

    SCSS