VAI BBC
- 9 followers
- Grand Rapids, Michigan
- https://bioinformaticsandbiostatisticscore.vai.org/
- bbc@vai.org
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rnaseq_workflow
rnaseq_workflow Publicsnakemake workflow for bulk RNA-seq workflow using STAR-edgeR
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Biscuit_Snakemake_Workflow
Biscuit_Snakemake_Workflow Public archiveSnakemake Workflow For WGBS Data
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piwi_RNA_pipeline
piwi_RNA_pipeline PublicScripts for heirarchical assignment of reads to feature biotypes
Perl 1
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Repositories
- Mouse-to-Usable_M2U Public
vari-bbc/Mouse-to-Usable_M2U’s past year of commit activity - demultiplex Public
vari-bbc/demultiplex’s past year of commit activity - CUT-Tag-workflow Public
This workflow performs trimming, alignment, and generates BigWig and BED files for CUT&Tag data. The workflow is optimized for the HPC environment at Van Andel Institute, but it can be easily modified for general use on other systems.
vari-bbc/CUT-Tag-workflow’s past year of commit activity - prep_bbc_shared Public
Pipeline for preparing shared resources such as aligner index files in the BBC.
vari-bbc/prep_bbc_shared’s past year of commit activity - LineageSwitch_Eiken_VBCS-1416 Public
A spot to share our code for the lineage switch meta analysis project!
vari-bbc/LineageSwitch_Eiken_VBCS-1416’s past year of commit activity - VBCS-1355 Public
vari-bbc/VBCS-1355’s past year of commit activity - methylation_array Public
vari-bbc/methylation_array’s past year of commit activity - gradient-metabolomics-VBCS-1384 Public
A shareable code space between Hannah Damico (VAI BBC) + Richard Cassidy (VAI Fondufe-Mittendorf Lab)
vari-bbc/gradient-metabolomics-VBCS-1384’s past year of commit activity
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