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Add ci test for kv state cache and fix bug #5857

Add ci test for kv state cache and fix bug

Add ci test for kv state cache and fix bug #5857

Workflow file for this run

# Copyright 2020-2023 Alibaba Group Holding Limited.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
name: Vineyard CI
on:
push:
paths-ignore:
- 'docs/'
- '**/*.rst'
- '**/*.md'
- '**/*.txt'
pull_request:
paths-ignore:
- 'docs/'
- '**/*.rst'
- '**/*.md'
- '**/*.txt'
workflow_dispatch:
concurrency:
group: ${{ github.repository }}-${{ github.event.number || github.head_ref || github.sha }}-${{ github.workflow }}
cancel-in-progress: true
env:
CMAKE_C_COMPILER_LAUNCHER: ccache
CMAKE_CXX_COMPILER_LAUNCHER: ccache
jobs:
ci:
runs-on: ${{ matrix.os }}
if: ${{ github.repository == 'v6d-io/v6d' }}
strategy:
matrix:
os: [ubuntu-20.04]
metadata: [local, etcd, redis] # disable redis for now as it seems has some nondeterministic bugs
exclude:
- metadata: local
- metadata: redis
env:
RUNNER_ARGS: "--meta=${{ matrix.metadata }}"
steps:
- uses: actions/checkout@v3
with:
submodules: true
- name: Free disk space
if: false
run: |
bash .github/free-disk-space.sh
- uses: dorny/paths-filter@v2
id: changes
with:
filters: |
mimalloc:
- 'modules/malloc/**'
- 'src/common/memory/**'
- 'src/server/memory/**'
- 'thirdparty/mimalloc/**'
- name: Generate Summary for Submodules
run: |
git submodule > git-modules.txt
cat git-modules.txt
- name: Cache for ccache
uses: actions/cache@v3
with:
path: ~/.ccache
key: ${{ runner.os }}-${{ matrix.metadata }}-ccache-${{ hashFiles('**/git-modules.txt') }}
restore-keys: |
${{ runner.os }}-${{ matrix.metadata }}-ccache-
- name: Install Dependencies for Linux
if: runner.os == 'Linux'
run: |
export PATH=/usr/lib/ccache:$PATH
sudo apt update -y
sudo apt install -y ca-certificates \
ccache \
cmake \
doxygen \
fuse3 \
libboost-all-dev \
libcurl4-openssl-dev \
libfuse3-dev \
libgflags-dev \
libgoogle-glog-dev \
libgmock-dev \
libgrpc-dev \
libgrpc++-dev \
libkrb5-dev \
libmpich-dev \
libprotobuf-dev \
librdkafka-dev \
libgsasl7-dev \
librdkafka-dev \
libssl-dev \
libunwind-dev \
libuv1-dev \
libxml2-dev \
libz-dev \
lsb-release \
redis-server \
pandoc \
protobuf-compiler-grpc \
python3-pip \
uuid-dev \
wget
# install apache-arrow
wget https://apache.jfrog.io/artifactory/arrow/$(lsb_release --id --short | tr 'A-Z' 'a-z')/apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb
sudo apt install -y -V ./apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb
sudo apt update
sudo apt install -y libarrow-dev=14.0.1-1 \
libarrow-dataset-dev=14.0.1-1 \
libarrow-acero-dev=14.0.1-1 \
libarrow-flight-dev=14.0.1-1 \
libgandiva-dev=14.0.1-1 \
libparquet-dev=14.0.1-1
# install deps for java
sudo apt install -y default-jdk-headless maven
# install clang-format
sudo curl -L https://github.com/muttleyxd/clang-tools-static-binaries/releases/download/master-1d7ec53d/clang-format-11_linux-amd64 --output /usr/bin/clang-format
sudo chmod +x /usr/bin/clang-format
# avoid possible permission errors
ccache -o cache_dir=~/.ccache
sudo mkdir -p ~/.ccache
sudo chmod -R a+wrx ~/.ccache
# install python packages for codegen, and io adaptors
sudo pip3 install -U "Pygments>=2.4.1"
sudo pip3 install -r requirements-setup.txt -r requirements.txt -r requirements-dev.txt
# install linters
sudo pip3 install auditwheel black isort flake8 twine
- name: Setup tmate session
if: false
uses: mxschmitt/action-tmate@v3
- name: Setup SSH environment
run: |
# avoid access node by DNS hostnames
r=`cat /etc/hosts | grep $(hostname) || true`
if [ -z "${r}" ];then export hn=$(hostname); sudo -E bash -c 'echo "127.0.0.1 ${hn}" >> /etc/hosts'; fi
cat /etc/hosts
# setup SSH server to allow login without password
cat > sshd_config <<EOF
SyslogFacility AUTHPRIV
PermitRootLogin yes
AuthorizedKeysFile .ssh/authorized_keys
PasswordAuthentication yes
ChallengeResponseAuthentication no
UsePAM yes
UseDNS no
X11Forwarding no
PrintMotd no
EOF
sudo mv sshd_config /etc/ssh/sshd_config
sudo systemctl restart ssh
# generate proper SSH key
cat /dev/zero | ssh-keygen -t rsa -b 4096 -N '' -f ~/.ssh/id_rsa
# add key to authorized_keys file
cat ~/.ssh/id_rsa.pub | tee -a ~/.ssh/authorized_keys
# ensure the permissions of SSH files
chmod 600 ~/.ssh/authorized_keys
chmod 700 ~/.ssh
sudo chmod -c 0755 ~/
ls -la ~/.ssh
# test SSH login, without password
ssh -vvv -i ~/.ssh/id_rsa -o BatchMode=yes -o StrictHostKeyChecking=no $(whoami)@localhost
- name: Setup tmate session
if: false
uses: mxschmitt/action-tmate@v3
- name: CMake
run: |
export PATH=/usr/lib/ccache:$PATH
mkdir build
cd build
cmake .. -DCMAKE_BUILD_TYPE=Debug \
-DBUILD_SHARED_LIBS=ON \
-DUSE_ASAN=ON \
-DBUILD_VINEYARD_COVERAGE=ON \
-DBUILD_VINEYARD_PYTHON_BINDINGS=ON \
-DBUILD_VINEYARD_BASIC=ON \
-DBUILD_VINEYARD_IO=ON \
-DBUILD_VINEYARD_IO_KAFKA=ON \
-DBUILD_VINEYARD_MALLOC=ON \
-DBUILD_VINEYARD_HOSSEINMOEIN_DATAFRAME=ON \
-DBUILD_VINEYARD_FUSE=ON \
-DBUILD_VINEYARD_FUSE_PARQUET=ON \
-DBUILD_VINEYARD_GRAPH=OFF \
-DBUILD_VINEYARD_GRAPH_WITH_GAR=OFF \
-DBUILD_VINEYARD_TESTS_ALL=ON
if [ "${{ matrix.metadata }}" == "redis" ]; then
cmake .. -DBUILD_VINEYARD_SERVER_REDIS=ON
fi
- name: Cpp format and lint
run: |
cd build
function prepend() { while read line; do echo "${1}${line}"; done; }
make vineyard_clformat
GIT_DIFF=$(git diff --ignore-submodules)
if [[ -n $GIT_DIFF ]]; then
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
echo "| clang-format failures found!"
echo "|"
echo "$GIT_DIFF" | prepend "| "
echo "|"
echo "| Run: "
echo "|"
echo "| make vineyard_clformat"
echo "|"
echo "| to fix this error."
echo "|"
echo "| Ensure you are working with clang-format-11, which can be obtained from"
echo "|"
echo "| https://github.com/muttleyxd/clang-tools-static-binaries/releases "
echo "|"
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
exit -1
fi
function ec() { [[ "$1" == "-h" ]] && { shift && eval $* > /dev/null 2>&1; ec=$?; echo $ec; } || eval $*; ec=$?; }
ec make vineyard_cpplint
if [[ "$ec" != "0" ]]; then
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
echo "| cpplint failures found! Run: "
echo "|"
echo "| make vineyard_cpplint"
echo "|"
echo "| to fix this error."
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
exit -1
fi
- name: Python format and lint
run: |
function prepend() { while read line; do echo "${1}${line}"; done; }
python3 setup.py lint --inplace=true
GIT_DIFF=$(git diff --ignore-submodules)
if [[ -n $GIT_DIFF ]]; then
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
echo "| black (python format) failures found!"
echo "|"
echo "$GIT_DIFF" | prepend "| "
echo "|"
echo "|Run: "
echo "|"
echo "| python3 setup.py lint --inplace=true"
echo "|"
echo "| to fix this error."
echo "|"
echo "| The tool black can be installed by"
echo "|"
echo "| pip3 install black isort flake8"
echo "|"
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
exit -1
fi
- name: Build
run: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64
pushd build
make -j`nproc`
make vineyard_tests -j`nproc`
make vineyard_client_python -j`nproc`
make ccache-stats
sudo make install
popd
# not used anymore
rm -rf build/lib*
# build & install vineyard for python
rm -rf build/lib* build/bdist.*
python3 setup.py bdist_wheel
for pkg in airflow bdist dask pyspark io kedro ml; do
rm -rf build/lib* build/bdist.*
python3 setup_${pkg}.py bdist_wheel
done
# install python packages
twine check dist/*.whl
sudo pip3 install dist/*.whl -U
# don't upload incomplete vineyard_bdist to release
rm -rf dist/vineyard_bdist* || true
- name: Get test data
run: |
git clone https://github.com/GraphScope/gstest.git --depth=1
- name: Setup tmate session
if: false
uses: mxschmitt/action-tmate@v3
- name: Run cpp tests
run: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu
export VINEYARD_DATA_DIR=`pwd`/gstest
export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}"
rm -rf default.etcd
rm -rf /dev/shm/etcd*
python3 test/runner.py $RUNNER_ARGS --with-cpp
- name: Run python tests
run: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu
export VINEYARD_DATA_DIR=`pwd`/gstest
export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}"
rm -rf default.etcd
rm -rf /dev/shm/etcd*
python3 test/runner.py $RUNNER_ARGS --with-python
- name: Run deployment tests
run: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu
export VINEYARD_DATA_DIR=`pwd`/gstest
export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}"
rm -rf default.etcd
rm -rf /dev/shm/etcd*
python3 test/runner.py $RUNNER_ARGS --with-deployment --with-migration
- name: Run contrib/thirdparty tests
if: false # lack of heavy dependencies like torch/tensorflow in CI
run: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu
export VINEYARD_DATA_DIR=`pwd`/gstest
export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}"
export VINEYARD_SPARK_PATH=`pwd`/java/spark/target/vineyard-spark_2.12-0.1-SNAPSHOT-jar-with-dependencies.jar
rm -rf default.etcd
rm -rf /dev/shm/etcd*
python3 test/runner.py $RUNNER_ARGS --with-contrib
- name: Run I/O tests
run: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu
export VINEYARD_DATA_DIR=`pwd`/gstest
export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}"
rm -rf default.etcd
rm -rf /dev/shm/etcd*
python3 test/runner.py $RUNNER_ARGS --with-io
- name: Run FUSE tests
run: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu
export VINEYARD_DATA_DIR=`pwd`/gstest
export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}"
rm -rf default.etcd
rm -rf /dev/shm/etcd*
python3 test/runner.py $RUNNER_ARGS --with-fuse
- name: Run CMake tests
run: |
cmake -S test/vineyard-cmake-example -B build/vineyard-cmake-example
cmake --build build/vineyard-cmake-example
- name: Upload Coverage
if: runner.os == 'Linux'
uses: codecov/codecov-action@v3
with:
verbose: true
- name: Extract tag name
id: tag
if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') }}
run: echo "TAG=${GITHUB_REF#refs/tags/}" >> $GITHUB_OUTPUT
- name: Upload vineyard contrib wheels to tagged release
uses: svenstaro/upload-release-action@v2
if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') && github.repository == 'v6d-io/v6d' }}
with:
repo_token: ${{ secrets.GITHUB_TOKEN }}
file: dist/*vineyard*.whl
file_glob: true
tag: ${{ steps.tag.outputs.TAG }}
prerelease: false
overwrite: true
body: "vineyard-contrib ${{ steps.tag.outputs.TAG }}"