6.1.3

This release provides a solution for a lot of minor bugs that sneaked into release v6.1.0, and adds some quality-of-life improvements to Unipept.

Enhancements:

• Exporting CSVs for samples is now performed on a background thread (making sure not to block the UI)

Bug fixes:

• [Peptonizer] Fixed taxon browser was not reset when switching between samples (#1577)
• [Peptonizer] Fixed Peptonizer not taking into account the taxon filter that's set in the first step
• [Peptonizer] Removed the "taxa in graph" option from Peptonizer since it was unclear what value this should be set to
• [Peptonizer] Fixed Peptonizer exports not containing the name for each taxon in the CSV (#1575)
• [Single peptide search] Search bar for filtering results of single peptide search was broken (#1565)
• Exporting CSV for large samples caused Unipept to crash (#1579)
• Update link of "Unipept in 2024" publication to official JPR publication (instead of preprint in BioRXiv).
• Color of text in Unipept visualization tooltips was blue (making the contrast with the background too low).
• Exporting data in Safari did not work (#1581)
• Cards in the first step of the "add sample wizard" did not have the same height
• Relative percentages for the peptide count column are visualized again in the functional result tables

6.1.2

This is a hotfix release of the Unipept Web application that provides a solution for the "add group" button in the file explorer that was not working.

Bug fixes:

• Fixed the add group button in the file explorer (#1578 )

6.1.1

This is a hotfix release of the Unipept Web application that provides a first set of fixes for using Unipept in combination with the Safari browser.

Bug fixes:

• Unipept crashes when trying to analyse any metaproteomics sample in Safari

Known issues:

• Exporting CSV or TSV files containing Unipept's results does not work in Safari. This will be solved in the next Unipept release.

6.1.0

This is a major new release for Unipept, including some very exciting new features. Version 6.1.0 introduces a web-based version of the Peptonizer2000. The Peptonizer2000 aims to bring confidence to the world of metaproteomics (see this publication for a detailed explanation) and has now been directly integrated into Unipept.

Instead of peptide lists, Unipept now also supports uploading CSV, TSV or PSMS-files (or any column-based file), using our new file upload wizard. Using this wizard, it's possible to extract specific columns (i.e. peptides or scores) from an input file and use them in your analyses.

We've also completely reworked the UI of the metaproteomics analysis page. In close resemblance to the Unipept Desktop application, Unipept now also supports projects on the web.

Screenshots:

New features / enhancements:

• Peptonizer 2000: Direct integration of the Peptonizer 2000 pipeline into the Unipept Web application. You no longer need to download and setup a Python workflow to start peptonizing your samples! (#1574)
• File upload wizard: Drag and drop any kind of column-based file into Unipept and conveniently select which columns should be processed. (#1574)
• Sample explorer: Samples can be organized into groups and are always shown in a clear file explorer on the left side of the "metaproteomics analysis" page. (#1574)

Minor changes and bug fixes:

• Added a link to the Unipept Tutorial on the publications page (#1573)
• Added SIHUMI dataset as sample inputs
• Implemented feature to upload file as peptide list (#1560)
• Fixed a lot of minor issues with the exports of data from Unipept (#1571)
• Fixed the "equate I and L" option was always checked (#1567)

6.0.1

This version is a small maintenance release for the Unipept Web Application.

Changes / Enhancements:

• Updated the "about us" page.
• Updated the "publications" page
• Updated the publications referenced from the footer of the web application.

6.0.0

Version 6.0.0 of the Unipept Web application contains some changes to the processing pipeline that allows it to better handle semi-tryptic and non-tryptic peptides, as well as peptides that contain missed cleavages.

5.1.5

This release provides a hotfix for two issues that started to pop up because of incompatibilities between the new Unipept index and the Unipept Web Application.

Bugs:

• Peptides were wrongly in-silico tryptically digested before being sent to the Unipept API for analysis (#1570)
• The "missed cleavage handling" tooltip was sometimes wrongly hidden too soon (#1570)

5.1.4

This release prepares the Unipept Web Application for the switch to using a suffix array in the backend.

Features / enhancements:

• Advanced missed cleavage handling is now always enabled! (#1569)

5.1.3

Release 5.1.3 of the Unipept Web application is a maintenance release that improves the documentation on the website.

Enhancements:

• Add Unipept Desktop 2.0 publication to the list of publications (#1564)

Bug fixes:

• Update link to increase Docker space on Windows tutorial (#1551)

5.1.2

Release 5.1.2 of the Unipept Web application fixes some textual inconsistencies that were present in the application.

Bug fixes:

• Renamed "test" to "Feature type" in the heatmap wizard (unipept/unipept-web-components#226)
• Capitalise "pride" in the dataset creation card (#1562)
• Rename "Equate I and L?" to "Equate I and L" (#1562)