curvilinear bits 'n pieces #538
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New stuff includes: - Variable vector dirichlet boundary conditions, `CurvilinearDirichletCondition`, driven by uw.fn. - A system wide rotation matrix that can be used for stokes or rotating a vector mesh variable - Meshes with non cartesian geometries. New examples under, docs/examples/curvi_examples.
…ode/underworld2 into jgiordani/curvi-bits
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Lets schedule a chat for next week to walk over this. |
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See |
* Fix issue 537 - vrms typo * Making sure the factor is an appropriate numpy type * Updates for docker image generation: (#550) * Switch deprecated `MAINTAINER` tag for new `LABEL` construct. * Set `/opt` to ugo+rwx to allow users to install new pip packages. * Remove `tini` which no longer appears to be required (and wasn't being used previously in any case). * Remove extras for notebook MPI usage, as this wasn't being used and is easy to reinstall. * Update UW image to point to newest base file image. * Update to CHANGES.md * Renaming guidelines.md -> development_guidelines.md * * Fixes h5 file save mode (underworldcode/underworld2/#533) * Minor documentation updates. * Minor redundant code removal. * Adding a pull request template! * Update `CHANGES.md` * Update to fix broken ReadTheDocs generation. * * Import scaling into uw. (#554) * Fix docstrings & doctests. * Rename pull request template as Github doesn't appear to register it with upper case naming. * Fix test in config which Py3.8 is complaining about. * * Added a check to ensure that the selected solver is available at runtime. (#553) The previous behaviour resulted in solves continuing unaware of solve difficulties, and failing elsewhere, or worse. * Added test for the solver check. * Solver check (#555) * * Added a check to ensure that the selected solver is available at runtime. The previous behaviour resulted in solves continuing unaware of solve difficulties, and failing elsewhere, or worse. * Added test for the solver check. * I've updated these models to run with "mumps" if available, and fallback to the default solver otherwise. * Using a relative path to reload swarm files * * For sequential IO operations, need to ensure that non-root procs open file with `append` mode instead of `write` mode (otherwise a new file is created by each proc, effectively deleting all data previously written). * Update mesh file mode to `write` mode. * Making test_long.sh executable * Adding a EBA example to the tests for now. Documentation will come next release when it's moved into examples. The 2 extra terms in the heat equation, viscous dissipation and adiabatic heating, should have equal volume integrals in the model, as per King et al. * Update CHANGES * github actions docker images * * Documentation, version numbers, and docker file updates. (#559) * File creation mode should be "w" here too. Interesting, "append" mode causes a test failure in the Docker container, but not baremetal Ubuntu. * Update docker_build_push.yml * Update docker_build_push.yml * Update docker_build_push.yml * Adding symlink to `LICENSE.md` for conda. Co-authored-by: John Mansour <[email protected]>
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@julesghub do we want to merge this? |
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What do we want to do with this. It's been a while and we have not discussed it. |
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I think we should aim to merge this code in. The interface isn't ideal but the functionality works and is part of Rohan and Thyagi's modeling. |
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Yes, I think we release 2.13 and then we merged into dev. |
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The additions for curvilinear mesh and solving.
This PR includes code changes and examples.
Significant code changes in Python and C layer:
Examples:
They include simple regression testing.