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Update to use the renamed template file, 'datm_in.IN' (#42)
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* Uses INPUT as input directory

* update fv3_run and datm_in.IN

* add updated fv3 in the workflow dir

* add updated fv3_run in the cycle dir

* reset input data location of UFS Noah-MP
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@rhaesung
rhaesung authored Jan 26, 2024
1 parent 47af1ff commit 756dceb
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18 changes: 9 additions & 9 deletions datm_cdeps_lnd_gswp3_rst
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Expand Up @@ -22,21 +22,21 @@ export SHOUR=00
export FHMAX=24
export FHROT=0

export DATM_IN_CONFIGURE=datm_in
export MESH_ATM="INPUT_DATM/fv1.9x2.5_141008_ESMFmesh.nc"
export atm_datamode="CLMNCEP"
export DATM_IN_CONFIGURE=datm_in.IN
export MESH_ATM=fv1.9x2.5_141008_ESMFmesh.nc
export atm_datamode=CLMNCEP
export ATM_NX_GLB=144
export ATM_NY_GLB=96

export DATM_STREAM_CONFIGURE=datm.streams.multi.IN
export MESH_ATM_DATA="INPUT_DATM/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.SCRIP.210520_ESMFmesh.nc"
export MESH_ATM_TOPO="INPUT_DATM/topodata_0.9x1.SCRIP.210520_ESMFmesh.nc"
export MESH_ATM_DATA="INPUT/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.SCRIP.210520_ESMFmesh.nc"
export MESH_ATM_TOPO="INPUT/topodata_0.9x1.SCRIP.210520_ESMFmesh.nc"
export SDATE=1999
export EDATE=2000
export DATA_ATM01="\"INPUT_DATM/clmforc.GSWP3.c2011.0.5x0.5.Solr.1999-12.nc\" \"INPUT_DATM/clmforc.GSWP3.c2011.0.5x0.5.Solr.2000-01.nc\""
export DATA_ATM02="\"INPUT_DATM/clmforc.GSWP3.c2011.0.5x0.5.Prec.1999-12.nc\" \"INPUT_DATM/clmforc.GSWP3.c2011.0.5x0.5.Prec.2000-01.nc\""
export DATA_ATM03="\"INPUT_DATM/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.1999-12.nc\" \"INPUT_DATM/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.2000-01.nc\""
export DATA_ATM04="\"INPUT_DATM/topodata_0.9x1.25_USGS_070110_stream_c151201.nc\""
export DATA_ATM01="\"INPUT/clmforc.GSWP3.c2011.0.5x0.5.Solr.1999-12.nc\" \"INPUT/clmforc.GSWP3.c2011.0.5x0.5.Solr.2000-01.nc\""
export DATA_ATM02="\"INPUT/clmforc.GSWP3.c2011.0.5x0.5.Prec.1999-12.nc\" \"INPUT/clmforc.GSWP3.c2011.0.5x0.5.Prec.2000-01.nc\""
export DATA_ATM03="\"INPUT/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.1999-12.nc\" \"INPUT/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.2000-01.nc\""
export DATA_ATM04="\"INPUT/topodata_0.9x1.25_USGS_070110_stream_c151201.nc\""

export UFS_CONFIGURE="ufs.configure.atm_lnd.IN"
export med_model="cmeps"
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48 changes: 48 additions & 0 deletions fv3_run
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@@ -0,0 +1,48 @@
mkdir -p RESTART INPUT
cd INPUT

rsync -arv ${LANDDA_INPUTS}/UFS_WM/DATM_GSWP3_input_data/. .

cd -

SUFFIX=${RT_SUFFIX}
# restart
if [ $WARM_START = .true. ]; then
# NoahMP restart files
cp ${MEM_MODL_OUTDIR}/restarts/tile/ufs.cpld.lnd.out.${RESTART_FILE_SUFFIX_SECS}.tile*.nc RESTART/.

# CMEPS restart and pointer files
RFILE1=ufs.cpld.cpl.r.${RESTART_FILE_SUFFIX_SECS}.nc
cp ${LANDDA_INPUTS}/restarts/gswp3/${RFILE1} RESTART/.
ls -1 "RESTART/${RFILE1}">rpointer.cpl

# CDEPS restart and pointer files
RFILE2=ufs.cpld.datm.r.${RESTART_FILE_SUFFIX_SECS}.nc
cp ${LANDDA_INPUTS}/restarts/gswp3/${RFILE2} RESTART/.
ls -1 "RESTART/${RFILE2}">rpointer.atm
fi

cd INPUT
rsync -arv ${LANDDA_INPUTS}/UFS_WM/NOAHMP_IC/ufs-land_C96_init_fields.tile1.nc C96.initial.tile1.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/NOAHMP_IC/ufs-land_C96_init_fields.tile2.nc C96.initial.tile2.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/NOAHMP_IC/ufs-land_C96_init_fields.tile3.nc C96.initial.tile3.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/NOAHMP_IC/ufs-land_C96_init_fields.tile4.nc C96.initial.tile4.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/NOAHMP_IC/ufs-land_C96_init_fields.tile5.nc C96.initial.tile5.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/NOAHMP_IC/ufs-land_C96_init_fields.tile6.nc C96.initial.tile6.nc

rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/C96.maximum_snow_albedo.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/C96.slope_type.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/C96.soil_type.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/C96.soil_color.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/C96.substrate_temperature.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/C96.vegetation_greenness.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/C96.vegetation_type.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/oro_C96.mx100.tile1.nc oro_data.tile1.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/oro_C96.mx100.tile2.nc oro_data.tile2.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/oro_C96.mx100.tile3.nc oro_data.tile3.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/oro_C96.mx100.tile4.nc oro_data.tile4.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/oro_C96.mx100.tile5.nc oro_data.tile5.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_fix_tiled/C96/oro_C96.mx100.tile6.nc oro_data.tile6.nc
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_input_data/INPUT/C96_grid.tile*.nc .
rsync -arv ${LANDDA_INPUTS}/UFS_WM/FV3_input_data/INPUT/grid_spec.nc C96_mosaic.nc
cd -
28 changes: 9 additions & 19 deletions submit_cycle.sh
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Expand Up @@ -249,7 +249,7 @@ while [ $date_count -lt $cycles_per_job ]; do
cp ${MEM_WORKDIR}/ufs_land_restart.${YYYY}-${MM}-${DD}_${HH}-00-00.tile${tile}.nc ${MEM_MODL_OUTDIR}/restarts/tile/ufs.cpld.lnd.out.${YYYY}-${MM}-${DD}-00000.tile${tile}.nc
done
fi

############################
# run the forecast model

Expand Down Expand Up @@ -301,24 +301,14 @@ while [ $date_count -lt $cycles_per_job ]; do

cp $CYCLEDIR/$TEST_NAME_RST ${PATHRT}/tests/$TEST_NAME_RST
source ${PATHRT}/detect_machine.sh
source ${PATHRT}/rt_utils.sh
source ${PATHRT}/default_vars.sh
source ${PATHRT}/rt_utils.sh
source ${PATHRT}/default_vars.sh
source ${PATHRT}/tests/$TEST_NAME_RST
source ${PATHRT}/atparse.bash

# Set inputdata location for each machines
echo "MACHINE_ID: $MACHINE_ID"
if [[ $MACHINE_ID = orion ]]; then
DISKNM=/work/noaa/epic/UFS-WM_RT
elif [[ $MACHINE_ID = hera ]]; then
DISKNM=/scratch2/NAGAPE/epic/UFS-WM_RT
else
echo "Warning: MACHINE_ID is default, users will have to define INPUTDATA_ROOT and RTPWD by themselves"
fi

source ${PATHRT}/bl_date.conf
RTPWD=${RTPWD:-$DISKNM/NEMSfv3gfs/develop-${BL_DATE}/${TEST_NAME}_${RT_COMPILER}}
INPUTDATA_ROOT=${INPUTDATA_ROOT:-$DISKNM/NEMSfv3gfs/input-data-20221101}
BL_DATE=20230816
RTPWD=${RTPWD:-${LANDDA_INPUTS}/NEMSfv3gfs/develop-${BL_DATE}/INTEL/${TEST_NAME}}
INPUTDATA_ROOT=${INPUTDATA_ROOT:-${LANDDA_INPUTS}/NEMSfv3gfs/input-data-20221101}

echo "RTPWD= $RTPWD"
echo "INPUTDATA_ROOT= $INPUTDATA_ROOT"
Expand All @@ -345,7 +335,7 @@ while [ $date_count -lt $cycles_per_job ]; do

# FV3 executable:
cp ${CYCLEDIR}/build/ufs-weather-model/src/ufs-weather-model-build/ufs_model ./ufs_model
cp ${LANDDA_INPUTS}/restarts/fv3_run ./fv3_run
cp ${CYCLEDIR}/fv3_run ./fv3_run

if [[ $DATM_CDEPS = 'true' ]] || [[ $FV3 = 'true' ]] || [[ $S2S = 'true' ]]; then
if [[ $HAFS = 'false' ]] || [[ $FV3 = 'true' && $HAFS = 'true' ]]; then
Expand Down Expand Up @@ -376,8 +366,8 @@ while [ $date_count -lt $cycles_per_job ]; do
source ./fv3_run

if [[ $DATM_CDEPS = 'true' ]]; then
atparse < ${PATHRT}/parm/${DATM_IN_CONFIGURE:-datm_in} > datm_in
atparse < ${PATHRT}/parm/${DATM_STREAM_CONFIGURE:-datm.streams.IN} > datm.streams
atparse < ${PATHRT}/parm/${DATM_IN_CONFIGURE:-datm_in.IN} > datm_in
atparse < ${PATHRT}/parm/${DATM_STREAM_CONFIGURE:-datm.streams.IN} > datm.streams
fi

# NoahMP table file
Expand Down

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