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-- Fix coastal lakes with revised code #856

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merged 16 commits into from
Nov 6, 2023
Merged

-- Fix coastal lakes with revised code #856

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402849a
-- Fix coastal lakes with revised code
ShanSunNOAA Sep 29, 2023
7dee97b
Modified lakefrac.F90 to ensure compatibility with the GNU compiler.
ShanSunNOAA Oct 5, 2023
93f05ce
Adding doxygen and revising driver script.
ShanSunNOAA Oct 6, 2023
2d19ebe
Revise doxygen info
ShanSunNOAA Oct 13, 2023
adc319d
Addressing doxygen warning.
ShanSunNOAA Oct 16, 2023
45f59f3
Update scripts in driver_scripts for the new datasets.
ShanSunNOAA Oct 18, 2023
7a680cb
Adding comments
ShanSunNOAA Oct 19, 2023
73b193a
Clean up scripts
ShanSunNOAA Oct 20, 2023
3e2808d
Adding add_lake=true to c96.uniform.sh
ShanSunNOAA Oct 20, 2023
3754527
Increase wall clock time
ShanSunNOAA Oct 24, 2023
efb3c71
Merge remote-tracking branch 'upstream/develop' into lake_20230928
GeorgeGayno-NOAA Nov 1, 2023
abc106d
Update 'readthedocs' for new input lake data.
GeorgeGayno-NOAA Nov 1, 2023
4925cae
Introducing 'binary_lake': when binary_lake=1 or 0, grid points with …
ShanSunNOAA Nov 2, 2023
4a7eeb3
Fixed a typo
ShanSunNOAA Nov 2, 2023
adc79a3
Improving the previous commit: change default values and comments
ShanSunNOAA Nov 2, 2023
58e25cd
Minor update so code compiles with GNU.
GeorgeGayno-NOAA Nov 3, 2023
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9 changes: 7 additions & 2 deletions docs/source/ufs_utils.rst
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Expand Up @@ -375,8 +375,13 @@ Program inputs and outputs

* grid file - the "grid" file from the make_hgrid or regional_esg programs - CRES_grid.tile#.nc - (NetCDF)
* orography file - the orography file including the 'inland' flag record from the inland program - oro.CRES.tile#.nc (NetCDF)
* lake status code file - GlobalLakeStatus.dat (located in `./fix/fix_orog <https://noaa-ufs-srw-pds.s3.amazonaws.com/index.html#fix/fix_orog/>`_). See GlobalLakeStatus.txt for the defintion of each code.
* lake depth file - GlobalLakeDepth.dat (located in `./fix/fix_orog <https://noaa-ufs-srw-pds.s3.amazonaws.com/index.html#fix/fix_orog/>`_). See GlobalLakeDepth.txt for a description of this file.
* lake status code file - One of the following files. (located in `./fix/fix_orog <https://noaa-ufs-srw-pds.s3.amazonaws.com/index.html#fix/fix_orog/>`_). See GlobalLakeStatus.txt for a description of the file format.
* GlobalLakeStatus_MOSISp.dat
* GlobalLakeStatus_GLDBv3release.dat
* GlobalLakeStatus_VIIRS.dat
* lake depth file - One of the following files. (located in `./fix/fix_orog <https://noaa-ufs-srw-pds.s3.amazonaws.com/index.html#fix/fix_orog/>`_). See GlobalLakeDepth.txt for a description of this file.
* GlobalLakeDepth_GLDBv3release.dat
* GlobalLakeDepth_GLOBathy.dat

**Output data:**

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9 changes: 7 additions & 2 deletions driver_scripts/driver_grid.hera.sh
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Expand Up @@ -106,10 +106,15 @@ export soil_type_src="bnu.v3.30s" # Soil type data.
# For Beijing Norm. Univ. data
# 1) "bnu.v3.30s" for global 30s data.

# choose dataset sources for lakefrac & lakedepth so that lake_data_srce=LakeFrac_LakeDepth;
# available options are 'MODISP_GLDBV3', 'MODISP_GLOBATHY', 'VIIRS_GLDBV3', 'VIIRS_GLOBATHY' & 'GLDBV3'
export lake_data_srce=MODISP_GLDBV3

if [ $gtype = uniform ]; then
export res=96
export add_lake=false # Add lake frac and depth to orography data.
export lake_cutoff=0.20 # lake frac < lake_cutoff ignored when add_lake=T
export add_lake=true # Add lake frac and depth to orography data.
export lake_cutoff=0.50 # ignore lake_frac < lake_cutoff when add_lake=T
export binary_lake=1 # return '1 > lake_frac >= lake_cutoff' as 1/0 when binary_lake=1/0
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this is a little confusing to me; I don't understand the need for "/0"

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when binary_lake=1, return lake_frac = 1 when lake_frac >= lake_cutoff

elif [ $gtype = stretch ]; then
export res=96
export stretch_fac=1.5 # Stretching factor for the grid
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9 changes: 7 additions & 2 deletions driver_scripts/driver_grid.jet.sh
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Expand Up @@ -104,10 +104,15 @@ export soil_type_src="bnu.v3.30s" # Soil type data.
# 4) "statsgo.nh.30s" for NH 30s data
# 5) "statsgo.30s" for global 30s data

# choose dataset sources for lakefrac & lakedepth so that lake_data_srce=LakeFrac_LakeDepth;
# available options are 'MODISP_GLDBV3', 'MODISP_GLOBATHY', 'VIIRS_GLDBV3', 'VIIRS_GLOBATHY' & 'GLDBV3'
export lake_data_srce=MODISP_GLDBV3

if [ $gtype = uniform ]; then
export res=96
export add_lake=false # Add lake frac and depth to orography data.
export lake_cutoff=0.20 # lake frac < lake_cutoff ignored when add_lake=T
export add_lake=true # Add lake frac and depth to orography data.
export lake_cutoff=0.50 # ignore lake_frac < lake_cutoff when add_lake=T
export binary_lake=1 # return '1 > lake_frac >= lake_cutoff' as 1/0 when binary_lake=1/0
elif [ $gtype = stretch ]; then
export res=96
export stretch_fac=1.5 # Stretching factor for the grid
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9 changes: 7 additions & 2 deletions driver_scripts/driver_grid.orion.sh
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Expand Up @@ -103,10 +103,15 @@ export soil_type_src="bnu.v3.30s" # Soil type data.
# 4) "statsgo.nh.30s" for NH 30s data
# 5) "statsgo.30s" for global 30s data

# choose dataset sources for lakefrac & lakedepth so that lake_data_srce=LakeFrac_LakeDepth;
# available options are 'MODISP_GLDBV3', 'MODISP_GLOBATHY', 'VIIRS_GLDBV3', 'VIIRS_GLOBATHY' & 'GLDBV3'
export lake_data_srce=MODISP_GLDBV3

if [ $gtype = uniform ]; then
export res=96
export add_lake=false # Add lake frac and depth to orography data.
export lake_cutoff=0.20 # lake frac < lake_cutoff ignored when add_lake=T
export add_lake=true # Add lake frac and depth to orography data.
export lake_cutoff=0.50 # ignore lake_frac < lake_cutoff when add_lake=T
export binary_lake=1 # return '1 > lake_frac >= lake_cutoff' as 1/0 when binary_lake=1/0
elif [ $gtype = stretch ]; then
export res=96
export stretch_fac=1.5 # Stretching factor for the grid
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9 changes: 7 additions & 2 deletions driver_scripts/driver_grid.wcoss2.sh
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Expand Up @@ -102,10 +102,15 @@ export soil_type_src="bnu.v3.30s" # Soil type data
# 4) "statsgo.nh.30s" for NH 30s data
# 5) "statsgo.30s" for global 30s data

# choose dataset sources for lakefrac & lakedepth so that lake_data_srce=LakeFrac_LakeDepth;
# available options are 'MODISP_GLDBV3', 'MODISP_GLOBATHY', 'VIIRS_GLDBV3', 'VIIRS_GLOBATHY' & 'GLDBV3'
export lake_data_srce=MODISP_GLDBV3

if [ $gtype = uniform ]; then
export res=96
export add_lake=false # Add lake frac and depth to orography data.
export lake_cutoff=0.20 # lake frac < lake_cutoff ignored when add_lake=T
export add_lake=true # Add lake frac and depth to orography data.
export lake_cutoff=0.50 # ignore lake_frac < lake_cutoff when add_lake=T
export binary_lake=1 # return '1 > lake_frac >= lake_cutoff' as 1/0 when binary_lake=1/0
elif [ $gtype = stretch ]; then
export res=96
export stretch_fac=1.5 # Stretching factor for the grid
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8 changes: 5 additions & 3 deletions reg_tests/grid_gen/c96.uniform.sh
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@@ -1,9 +1,9 @@
#!/bin/bash

#-----------------------------------------------------------------------
# Create a C96 global uniform grid. Compare output to a set
# of baseline files using the 'nccmp' utility. This script is
# run by the machine specific driver script.
# Create a C96 global uniform grid including inland lakes. Compare
# output to a set of baseline files using the 'nccmp' utility. This
# script is run by the machine specific driver script.
#-----------------------------------------------------------------------

set -x
Expand All @@ -13,6 +13,8 @@ export out_dir=${WORK_DIR}/c96.uniform

export res=96
export gtype=uniform
export add_lake=true
export lake_data_srce=MODISP_GLDBV3

NCCMP=${NCCMP:-$(which nccmp)}

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2 changes: 1 addition & 1 deletion reg_tests/grid_gen/driver.hera.sh
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Expand Up @@ -66,7 +66,7 @@ export OMP_NUM_THREADS=24
#-----------------------------------------------------------------------------

LOG_FILE1=${LOG_FILE}01
TEST1=$(sbatch --parsable --ntasks-per-node=24 --nodes=1 -t 0:10:00 -A $PROJECT_CODE -q $QUEUE -J c96.uniform \
TEST1=$(sbatch --parsable --ntasks-per-node=24 --nodes=1 -t 0:15:00 -A $PROJECT_CODE -q $QUEUE -J c96.uniform \
-o $LOG_FILE1 -e $LOG_FILE1 ./c96.uniform.sh)

#-----------------------------------------------------------------------------
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2 changes: 1 addition & 1 deletion reg_tests/grid_gen/driver.jet.sh
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Expand Up @@ -64,7 +64,7 @@ export OMP_NUM_THREADS=24
#-----------------------------------------------------------------------------

LOG_FILE1=${LOG_FILE}01
TEST1=$(sbatch --parsable --ntasks-per-node=24 --nodes=1 -t 0:10:00 -A $PROJECT_CODE -q $QUEUE -J c96.uniform \
TEST1=$(sbatch --parsable --ntasks-per-node=24 --nodes=1 -t 0:20:00 -A $PROJECT_CODE -q $QUEUE -J c96.uniform \
--partition=xjet -o $LOG_FILE1 -e $LOG_FILE1 ./c96.uniform.sh)

#-----------------------------------------------------------------------------
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2 changes: 1 addition & 1 deletion reg_tests/grid_gen/driver.wcoss2.sh
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Expand Up @@ -67,7 +67,7 @@ rm -fr $WORK_DIR
#-----------------------------------------------------------------------------

LOG_FILE1=${LOG_FILE}01
TEST1=$(qsub -V -o $LOG_FILE1 -e $LOG_FILE1 -q $QUEUE -A $PROJECT_CODE -l walltime=00:10:00 \
TEST1=$(qsub -V -o $LOG_FILE1 -e $LOG_FILE1 -q $QUEUE -A $PROJECT_CODE -l walltime=00:15:00 \
-N c96.uniform -l select=1:ncpus=30:mem=40GB $PWD/c96.uniform.sh)

#-----------------------------------------------------------------------------
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38 changes: 34 additions & 4 deletions sorc/orog_mask_tools.fd/inland.fd/inland.F90
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Expand Up @@ -15,15 +15,15 @@ PROGRAM inland_mask

REAL, ALLOCATABLE :: inland(:,:,:)
REAL, ALLOCATABLE :: land_frac(:,:,:)
INTEGER :: i_ctr, j_ctr, tile_beg, tile_end
INTEGER :: tile_beg, tile_end
INTEGER :: cs_res, x_res, y_res
CHARACTER(len=32) :: arg
INTEGER :: stat
INTEGER :: max_rd
REAL :: cutoff
CHARACTER(len=1) :: reg

LOGICAL, ALLOCATABLE :: done(:,:,:)
LOGICAL, ALLOCATABLE :: done(:,:,:)

CALL getarg(0, arg) ! get the program name
IF (iargc() /= 3 .AND. iargc() /= 4) THEN
Expand Down Expand Up @@ -78,14 +78,19 @@ PROGRAM inland_mask
!! @author Ning Wang
SUBROUTINE mark_global_inland(cs_res)
INTEGER, INTENT(IN) :: cs_res
INTEGER :: i_seed, j_seed

ALLOCATE(done(cs_res,cs_res,6))
ALLOCATE(inland(cs_res,cs_res,6))
done = .false.
inland = 1.0
i_ctr = cs_res/2; j_ctr = cs_res/2

CALL mark_global_inland_rec_d(i_ctr, j_ctr, 2, 0)
i_seed = cs_res/2; j_seed = cs_res/2
CALL mark_global_inland_rec_d(i_seed, j_seed, 2, 0)

! to make sure black sea is excluded
i_seed = REAL(cs_res)/32.0*3; j_seed = i_seed
CALL mark_global_inland_rec_d(i_seed, j_seed, 3, 0)

DEALLOCATE(done)

Expand All @@ -99,6 +104,7 @@ END SUBROUTINE mark_global_inland
SUBROUTINE mark_inland_reg(cs_res)
INTEGER, INTENT(IN) :: cs_res
INTEGER :: i_seed, j_seed
INTEGER :: i

ALLOCATE(done(x_res,y_res,1))
ALLOCATE(inland(x_res,y_res,1))
Expand All @@ -116,6 +122,30 @@ SUBROUTINE mark_inland_reg(cs_res)
i_seed = x_res/3; j_seed = 1
CALL mark_regional_inland_rec_d(i_seed, j_seed, 1, 0)

j_seed = 1
DO i = 1, x_res
CALL mark_regional_inland_rec_d(i, j_seed, 1, 0)
ENDDO

j_seed = y_res
DO i = x_res/2, x_res
CALL mark_regional_inland_rec_d(i, j_seed, 1, 0)
ENDDO

! set up additional 3 seeds for ESG CONUS grid
! i_seed = 1600; j_seed = 1040
! i_seed = x_res - 10; j_seed = y_res
! CALL mark_regional_inland_rec_d(i_seed, j_seed, 1, 0)

! i_seed = x_res - 60; j_seed = y_res
! CALL mark_regional_inland_rec_d(i_seed, j_seed, 1, 0)

! i_seed = x_res - 275; j_seed = y_res
! CALL mark_regional_inland_rec_d(i_seed, j_seed, 1, 0)

! i_seed = 500; j_seed = 1
! CALL mark_regional_inland_rec_d(i_seed, j_seed, 1, 0)

DEALLOCATE(done)

END SUBROUTINE mark_inland_reg
Expand Down
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