set otherjvmheap value to 4GB and subtract it from task.memory to set…

… jvmheap
uclahs-cds · Oct 11, 2024 · 630b1e1 · 630b1e1
1 parent 58bd048
commit 630b1e1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/module/gridss.nf b/module/gridss.nf
@@ -94,7 +94,7 @@ process run_assembly_GRIDSS {
     script:
         otherjvmheap = 4.GB
         gridss_otherjvmheap = "${otherjvmheap.toGiga()}g"
-        gridss_jvmheap = "${(task.memory - gridss_otherjvmheap).toGiga()}g"
+        gridss_jvmheap = "${(task.memory - otherjvmheap).toGiga()}g"
         gridss_jar = "/usr/local/share/gridss-${params.gridss_version}-1/gridss.jar"
         output_filename = generate_standard_filename(
             "GRIDSS2-${params.gridss_version}",