Merge pull request #156 from uclahs-cds/nwiltsie-mask-test-versions

Mask version number in config tests
uclahs-cds · Jun 11, 2024 · aa3799d · aa3799d
2 parents 994f46d + 67711e0
commit aa3799d
Showing 1 changed file with 14 additions and 6 deletions.
diff --git a/test/configtest-F16.json b/test/configtest-F16.json
@@ -30,6 +30,14 @@
     "trace.file",
     "params.date"
   ],
+  "version_fields": [
+    "manifest.version",
+    "params.log_output_dir",
+    "params.output_dir_base",
+    "report.file",
+    "timeline.file",
+    "trace.file"
+  ],
   "expected_result": {
     "docker": {
       "all_group_ids": "$(for i in `id --real --groups`; do echo -n \"--group-add=$i \"; done)",
@@ -41,7 +49,7 @@
       "author": "Yu Pan, Tim Sanders, Yael Berkovich, Mohammed Faizal Eeman Mootor",
       "description": "A pipeline to call germline structural variants utilizing Delly and Manta",
       "name": "call-gSV",
-      "version": "5.1.0"
+      "version": "VER.SI.ON"
     },
     "params": {
       "GCNV": "gCNV",
@@ -70,7 +78,7 @@
           ]
         }
       },
-      "log_output_dir": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z",
+      "log_output_dir": "/tmp/test-only-outputs/call-gSV-VER.SI.ON/8675309/log-call-gSV-VER.SI.ON-19970704T165655Z",
       "manta_version": "1.6.0",
       "map_qual": "20",
       "mappability_map": "/hot/ref/tool-specific-input/Delly/GRCh38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.r101.s501.blacklist.gz",
@@ -79,7 +87,7 @@
       "min_cpus": "1",
       "min_memory": "1 MB",
       "output_dir": "/tmp/test-only-outputs",
-      "output_dir_base": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309",
+      "output_dir_base": "/tmp/test-only-outputs/call-gSV-VER.SI.ON/8675309",
       "pipeval_version": "4.0.0-rc.2",
       "proc_resource_params": {
         "call_gCNV_Delly": {
@@ -368,15 +376,15 @@
     },
     "report": {
       "enabled": true,
-      "file": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z/nextflow-log/report.html"
+      "file": "/tmp/test-only-outputs/call-gSV-VER.SI.ON/8675309/log-call-gSV-VER.SI.ON-19970704T165655Z/nextflow-log/report.html"
     },
     "timeline": {
       "enabled": true,
-      "file": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z/nextflow-log/timeline.html"
+      "file": "/tmp/test-only-outputs/call-gSV-VER.SI.ON/8675309/log-call-gSV-VER.SI.ON-19970704T165655Z/nextflow-log/timeline.html"
     },
     "trace": {
       "enabled": true,
-      "file": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z/nextflow-log/trace.txt"
+      "file": "/tmp/test-only-outputs/call-gSV-VER.SI.ON/8675309/log-call-gSV-VER.SI.ON-19970704T165655Z/nextflow-log/trace.txt"
     },
     "tz": "sun.util.calendar.ZoneInfo[id=\"UTC\",offset=0,dstSavings=0,useDaylight=false,transitions=0,lastRule=null]",
     "workDir": "/scratch/300935"