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Bump external/pipeline-Nextflow-config from c77aeca to 1960eaa (#110
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@dependabot
dependabot[bot] authored Jan 3, 2024
1 parent 48ff75c commit 6501f78
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion external/pipeline-Nextflow-config
Submodule pipeline-Nextflow-config updated 35 files
+4 −4 .github/PULL_REQUEST_TEMPLATE.md
+1 −1 .github/workflows/cicd-base.yaml
+41 −0 .github/workflows/self-tests.yaml
+24 −0 CHANGELOG.md
+8 −0 README.md
+31 −0 config/align_methods/README.md
+32 −0 config/align_methods/align_methods.config
+61 −0 config/align_methods/custom_schema_types.config
+1 −1 config/bam/bam_parser.config
+4 −2 config/csv/csv_parser.config
+14 −0 config/methods/README.md
+68 −15 config/methods/common_methods.config
+32 −0 config/pipeline_selector/README.md
+52 −0 config/pipeline_selector/pipeline_selector.nf
+42 −0 config/schema/README.md
+66 −4 config/schema/custom_schema_types.config
+39 −13 config/schema/schema.config
+24 −0 config/store_object_as_json/README.md
+12 −0 config/store_object_as_json/store_object_as_json.config
+2 −2 metadata.yaml
+68 −0 tests/AlignMethodsTests.groovy
+52 −0 tests/BamParserTests.groovy
+27 −0 tests/Dockerfile
+81 −0 tests/ExampleTests.groovy
+74 −0 tests/SetEnvTests.groovy
+19 −0 tests/config/pom.xml
+6 −0 tests/data/README.md
+ − tests/data/toy-rg.bam
+16 −0 tests/data/toy-rg.sam
+ − tests/data/toy.bam
+15 −0 tests/data/toy.sam
+29 −0 tests/run_tests.sh
+26 −0 tests/suite.groovy
+24 −0 tests/validator/bl/BLConfigBuilder.groovy
+54 −0 tests/validator/bl/NextflowConfigTests.groovy

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