Code

organize for metapipeline#23

Code

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alkaZeltser merged 20 commits intomainuclahs-cds/pipeline-calculate-targeted-coverage:mainfrom nzeltser-organize-for-metapipelineuclahs-cds/pipeline-calculate-targeted-coverage:nzeltser-organize-for-metapipelineCopy head branch name to clipboardDec 1, 2023

+873-126

Commits

Commits on Oct 30, 2023

• add bedops docker

  alkaZeltser

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  bee3a4b

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• add process for merging off and on-target intervals

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  1edb483

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• add depth filtering process

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  5af09b8

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• handle various output conditions

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  d4584df

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• update template

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  f38a622

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• incorporate merged target file workflow

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  5227839

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• add flow diagram

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  8997af7

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Commits on Oct 31, 2023

• replace bedops with bash+bedtools workaround

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  c06584e

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• update image filename

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  68c3fd7

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Commits on Nov 3, 2023

• flow diagram updates

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Commits on Nov 4, 2023

• update readme

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  1ab4b16

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Commits on Nov 8, 2023

• update template config

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  8a7180a

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• add near_distance param to metrics calc

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  3426934

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• add bedtools-based merge bedfiles process

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  de544ea

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• add some documentation

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  7841278

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Commits on Nov 10, 2023

• PR comment fixes

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  6d3bd55

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Commits on Nov 28, 2023

• add checksums

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  ee13fad

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• update configs

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  a4b1800

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• update changelog

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  3c1a527

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Commits on Dec 1, 2023

• directory path cleanup

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  e2a641f

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