Merge pull request #220 from uclahs-cds/jarbet-samtools-merge-cpus-mem

optimize #CPUs for run_merge_SAMtools
uclahs-cds · Jul 22, 2022 · acf77d9 · acf77d9
2 parents 4c77da2 + 6d0c68b
commit acf77d9
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Showing 4 changed files with 20 additions and 4 deletions.
diff --git a/config/F16.config b/config/F16.config
@@ -15,7 +15,11 @@ process {
         }
     withName: run_sort_SAMtools {
         cpus = 12
-        memory = 10.GB
+        memory = 15.GB
+        }
+    withName: run_merge_SAMtools {
+        cpus = 8
+        memory = 2.GB
         }
     withName: run_MarkDuplicate_Picard {
         cpus = 1

diff --git a/config/F32.config b/config/F32.config
@@ -15,7 +15,11 @@ process {
         }
     withName: run_sort_SAMtools {
         cpus = 12
-        memory = 10.GB
+        memory = 15.GB
+        }
+    withName: run_merge_SAMtools {
+        cpus = 12
+        memory = 2.GB        
         }
     withName: run_MarkDuplicate_Picard {
         cpus = 1

diff --git a/config/F72.config b/config/F72.config
@@ -15,7 +15,11 @@ process {
         }
     withName: run_sort_SAMtools {
         cpus = 12
-        memory = 10.GB
+        memory = 15.GB
+        }
+    withName: run_merge_SAMtools {
+        cpus = 12
+        memory = 2.GB
         }
     withName: run_MarkDuplicate_Picard {
         cpus = 1

diff --git a/config/M64.config b/config/M64.config
@@ -15,7 +15,11 @@ process {
         }
     withName: run_sort_SAMtools {
         cpus = 12
-        memory = 10.GB
+        memory = 15.GB
+        }
+    withName: run_merge_SAMtools {
+        cpus = 12
+        memory = 2.GB
         }
     withName: run_MarkDuplicate_Picard {
         cpus = 1