revert join checks

uclahs-cds · Oct 18, 2024 · e600366 · e600366
1 parent 3032235
commit e600366
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/module/predict_stability.nf b/module/predict_stability.nf
@@ -115,9 +115,9 @@ workflow workflow_predict_stability {
 
     run_apply_stability_annotations(
         vcf_with_sample_id.join(
-            compress_and_index_tsv.out.compressed_tsv_with_index
-            // failOnDuplicate: true,
-            // failOnMismatch: true
+            compress_and_index_tsv.out.compressed_tsv_with_index,
+            failOnDuplicate: true,
+            failOnMismatch: true
         ),
         variant_caller,
         dest_fasta_id

diff --git a/module/snv_annotations.nf b/module/snv_annotations.nf
@@ -222,9 +222,9 @@ workflow workflow_annotate_snvs {
 
     annotate_trinucleotide_BCFtools(
         annotate_RepeatMasker_BCFtools.out.repeatmasker_vcf.join(
-            compress_and_index_tsv.out.compressed_tsv_with_index
-            // failOnDuplicate: true,
-            // failOnMismatch: true
+            compress_and_index_tsv.out.compressed_tsv_with_index,
+            failOnDuplicate: true,
+            failOnMismatch: true
         )
     )