update common.config to match new template.config

test/common.config

@@ -3,12 +3,6 @@
 params {
     // Parameterized values that tests can use
     test_base = "/hot/project/method/AlgorithmEvaluation/BNCH-000142-GRCh37v38/publish"
-
-    test_chains = [
-        GRCh37ToGRCh38: "${test_base}/resource/hg19ToHg38.over.chain",
-        GRCh38ToGRCh37: "${test_base}/resource/hg38ToHg19.over.chain"
-    ]
-
     model_37_38 = "${test_base}/model/GRCh37-to-GRCh38/RF-model_GRCh37-to-GRCh38"
     model_38_37 = "${test_base}/model/GRCh38-to-GRCh37/RF-model_GRCh38-to-GRCh37"
 
@@ -33,29 +27,12 @@ params {
         ]
     ]
 
-    test_contigs = [
-        GRCh37ToGRCh38: "${test_base}/resource/GRCh38_VCF-header-contigs.txt",
-        GRCh38ToGRCh37: "${test_base}/resource/GRCh37_VCF-header-contigs.txt"
-    ]
-
-    test_repeat_bed = [
-        GRCh37ToGRCh38: "${test_base}/resource/GRCh38_RepeatMasker-intervals.bed",
-        GRCh38ToGRCh37: "${test_base}/resource/GRCh37_RepeatMasker-intervals.bed"
-    ]
-
-    // Concrete values for tests
-    header_contigs = test_contigs[liftover_direction]
-    gnomad_rds = "${test_base}/resource/gnomad.v4.0.sv.Rds"
-    chain_file = test_chains[liftover_direction]
-    repeat_bed = test_repeat_bed[liftover_direction]
-
-    funcotator_data_source = "${test_base}/resource/funcotator_dataSources.v1.7.20200521s_StableLift"
-
     rf_model = test_models[liftover_direction][variant_caller]
 
     save_intermediate_files = true
     ucla_cds = false
 
     fasta_ref_37 = "/hot/ref/reference/GRCh37-EBI-hs37d5/hs37d5.fa"
     fasta_ref_38 = "/hot/ref/reference/GRCh38-BI-20160721/Homo_sapiens_assembly38.fasta"
+    resource_bundle_path = "/hot/project/method/AlgorithmEvaluation/BNCH-000142-GRCh37v38/publish/resource"
 }