Merge pull request #401 from uc-cdis/fix/code-coverage

Readd code coverage with coveralls

.github/workflows/ci.yaml

@@ -24,6 +24,7 @@ jobs:
        setup-script: 'tests/ci_setup.sh'
        test-script: 'tests/ci_commands_script.sh'
        python-version: '3.9'
+       run-coveralls: true
 
   ImageBuildAndPush:
     name: Build Image and Push

.secrets.baseline

@@ -100,7 +100,16 @@
         "filename": ".github/workflows/ci.yaml",
         "hashed_secret": "3e26d6750975d678acb8fa35a0f69237881576b0",
         "is_verified": false,
-        "line_number": 19
+        "line_number": 18
+      }
+    ],
+    "README.md": [
+      {
+        "type": "Secret Keyword",
+        "filename": "README.md",
+        "hashed_secret": "a94a8fe5ccb19ba61c4c0873d391e987982fbbd3",
+        "is_verified": false,
+        "line_number": 71
       }
     ],
     "bin/settings.py": [
@@ -327,5 +336,5 @@
       }
     ]
   },
-  "generated_at": "2023-10-06T21:59:13Z"
+  "generated_at": "2023-10-20T23:12:07Z"
 }

README.md

@@ -1,8 +1,7 @@
 # sheepdog
 
 [![Codacy Badge](https://api.codacy.com/project/badge/Grade/0069fa67707f48a7aabfe9de6b857392)](https://www.codacy.com/app/uc-cdis/sheepdog?utm_source=github.com&utm_medium=referral&utm_content=uc-cdis/sheepdog&utm_campaign=Badge_Grade)
-[![Codacy Badge](https://api.codacy.com/project/badge/Coverage/0069fa67707f48a7aabfe9de6b857392)](https://www.codacy.com/app/uc-cdis/sheepdog?utm_source=github.com&utm_medium=referral&utm_content=uc-cdis/sheepdog&utm_campaign=Badge_Coverage)
-
+[![Coverage Status](https://coveralls.io/repos/github/uc-cdis/sheepdog/badge.svg)](https://coveralls.io/github/uc-cdis/sheepdog)
 ## Installation
 
 ### For General Usage
@@ -104,4 +103,4 @@ After that you can run unit tests with:
 bash tests/ci_commands_script.sh
 ```
 
-> You can see more detailed information on local dev setup in the docs/local_dev_environment.md
+> You can see more detailed information on local dev setup in the docs/local_dev_environment.md