update header and footer

gen3/mkdocs.yml

@@ -104,13 +104,14 @@ nav:
 
 theme:
   favicon: img/Gen3-3.ico
-  logo: img/Gen3_Logo-01_blue_no_commons.png
+  logo: img/gen3_new_logo_white.svg
   name: material
   features:
     - navigation.footer
   custom_dir: overrides
-
   palette:
+    - primary: black
+
 
    # Palette toggle for light mode
     - media: "(prefers-color-scheme: light)"
@@ -129,8 +130,6 @@ theme:
     - navigation.indexes
     - navigation.tracking
     - navigation.path
-extra_css:
-  - stylesheets/extra.css
 use_directory_urls: true
 markdown_extensions:
   - admonition
@@ -152,3 +151,15 @@ plugins:
       blog_toc: true
   - mkdocs-video:
       is_video: True
+extra:
+  social:
+    - icon: fontawesome/brands/linkedin
+      link: https://www.linkedin.com/company/center-for-translational-data-science/
+    - icon: fontawesome/brands/x-twitter
+      link: https://x.com/UChicagoCTDS
+    - icon: fontawesome/brands/x-twitter
+      link: https://x.com/gen3data
+    - icon: fontawesome/brands/slack
+      link: https://docs.google.com/forms/d/e/1FAIpQLSczyhhOXeCK9FdVtpQpelOHYnRj1EAq1rwwnm9q6cPAe5a7ug/viewform
+    - icon: fontawesome/brands/youtube
+      link: https://www.youtube.com/channel/UCMCwQy4EDd1BaskzZgIOsNQ/featured

gen3/overrides/partials/header.html

@@ -0,0 +1,75 @@
+{#-
+  This file was automatically generated - do not edit
+-#}
+{% set class = "md-header" %}
+{% if "navigation.tabs.sticky" in features %}
+  {% set class = class ~ " md-header--shadow md-header--lifted" %}
+{% elif "navigation.tabs" not in features %}
+  {% set class = class ~ " md-header--shadow" %}
+{% endif %}
+<header class="{{ class }}" data-md-component="header">
+  <nav class="md-header__inner md-grid" aria-label="{{ lang.t('header') }}">
+    <a href="{{ config.extra.homepage | d(nav.homepage.url, true) | url }}" title="{{ config.site_name | e }}" class="md-header__button md-logo" aria-label="{{ config.site_name }}" data-md-component="logo">
+      {% include "partials/logo.html" %}
+    </a>
+    <label class="md-header__button md-icon" for="__drawer">
+      {% set icon = config.theme.icon.menu or "material/menu" %}
+      {% include ".icons/" ~ icon ~ ".svg" %}
+    </label>
+    <div class="md-header__title" data-md-component="header-title">
+      <div class="md-header__ellipsis">
+        <div class="md-header__topic">
+          <span class="md-ellipsis">
+            {{ config.site_name }}
+          </span>
+        </div>
+        <div class="md-header__topic" data-md-component="header-topic">
+          <span class="md-ellipsis">
+            {% if page.meta and page.meta.title %}
+              {{ page.meta.title }}
+            {% else %}
+              {{ page.title }}
+            {% endif %}
+          </span>
+        </div>
+      </div>
+    </div>
+    {% if config.theme.palette %}
+      {% if not config.theme.palette is mapping %}
+        {% include "partials/palette.html" %}
+      {% endif %}
+    {% endif %}
+    {% if not config.theme.palette is mapping %}
+      {% include "partials/javascripts/palette.html" %}
+    {% endif %}
+    {% if config.extra.alternate %}
+      {% include "partials/alternate.html" %}
+    {% endif %}
+
+    <!-- Custom link to Gen3.org (with additional spacing to the left of the search bar) -->
+    <div style="margin-right: 20px;"> <!-- Adjust the margin as needed -->
+      <h1 href="https://gen3.org/" class="md-header__button" aria-label="Gen3.org" target="_blank" rel="noopener noreferrer">
+        Gen3.org
+      </h1>
+    </div>
+    <!-- End of custom link to Gen3.org -->
+
+    {% if "material/search" in config.plugins %}
+      <label class="md-header__button md-icon" for="__search">
+        {% set icon = config.theme.icon.search or "material/magnify" %}
+        {% include ".icons/" ~ icon ~ ".svg" %}
+      </label>
+      {% include "partials/search.html" %}
+    {% endif %}
+    {% if config.repo_url %}
+      <div class="md-header__source">
+        {% include "partials/source.html" %}
+      </div>
+    {% endif %}
+  </nav>
+  {% if "navigation.tabs.sticky" in features %}
+    {% if "navigation.tabs" in features %}
+      {% include "partials/tabs.html" %}
+    {% endif %}
+  {% endif %}
+</header>