New gen3 tools and add new commons to powered by Gen3 (#239)

* update ACED logo * new tools and commons
uc-cdis · Jul 17, 2024 · 703c977 · 703c977
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diff --git a/content/figs/ACED-logo.jpeg b/content/figs/ACED-logo.jpeg
diff --git a/content/figs/Australian-Biocommons-Logo-Horizontal-144dpi-Transparent.png b/content/figs/Australian-Biocommons-Logo-Horizontal-144dpi-Transparent.png
diff --git a/content/figs/Australian-Biocommons-Logo-Horizontal-RGB.png b/content/figs/Australian-Biocommons-Logo-Horizontal-RGB.png
diff --git a/content/figs/OHSU-logo.png b/content/figs/OHSU-logo.png
diff --git a/content/figs/commons/ToxDataCommons.png b/content/figs/commons/ToxDataCommons.png
diff --git a/content/gen3-tools.md b/content/gen3-tools.md
@@ -23,20 +23,35 @@ g3Starts:
       caption: GitHub
       link: https://github.com/uc-cdis/gen3utils
   s3:
+    name: g3t
+    fig: /figs/OHSU-logo.png
+    detail: Gen3 Tracker (g3t) includes utilities to manage Gen3 schemas, projects and submissions.  Tools include those to create and manage metadata, manipulate file manifests, status checks, metadata validation, user access, and others.                                                       
+    button:
+      caption: GitHub
+      link: https://github.com/ACED-IDP/gen3_util
+  s4:
+    name: g3t_etl
+    fig: /figs/OHSU-logo.png
+    detail: g3t_etl is a command-line tool and library designed to manage Gen3 metadata including transformations to and from FHIR formatted data. The tool provides various commands, each serving a specific purpose.                                   
+    button:
+      caption: GitHub
+      link: https://github.com/ACED-IDP/g3t_etl
+
+  s5:
     name: dictionaryutils and dictionary-visualizer
     fig: /figs/BioTeam-Logo_2021.svg
     detail: Stand-alone tools developed to test and visualize Gen3 dictionaries.  They allow for quicker testing of dictionary updates and do not require a full Gen3 deployment.  Created by BioTeam.
     button:
       caption: GitHub
       link: https://github.com/bioteam/dictionaryutils
-  s4:
+  s6:
     name: gen3schemadev
-    fig: /figs/Australian-Biocommons-Logo-Horizontal-144dpi-Transparent.png
+    fig: /figs/Australian-Biocommons-Logo-Horizontal-RGB.png
     detail: A python tool that uses Google Sheets for simple, automated and efficient dictionary development.  The Gen3 schema mapping library enables an automated workflow to edit, test, validate and publish Gen3 Data Dictionaries, using a google sheet as input.  Created by the Australian BioCommons.
     button:
       caption: GitHub
       link: https://github.com/AustralianBioCommons/gen3schemadev
-  s5:
+  s7:
     name: UMCCR Data Dictionary
     fig: /figs/melbourne.svg
     detail: Gen3 dictionary tools (Docker images) for conversion, visualization, testing and validation to allow for iterative development of Gen3 data dictionary schema locally. Created by the Genomics Platform Group at University of Melbourne Centre for Cancer Research (UMCCR).
@@ -66,7 +81,7 @@ g3Starts:
 <section>
   <div class="g3-inner-wrapper g3-space__padding-md-top g3-mb-space__padding-lg-top g3-mb-space__padding-lg-bottom">
     <div class="g3-table g3-space__margin-lg-bottom g3-mb-space__margin-lg-bottom">
-      <div class="g3-col__50 g3-text__center g3-space__padding-sm-left-right">
+      <div class="g3-col__33 g3-text__center g3-space__padding-sm-left-right">
         <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s1.fig" >}}"/>
         <h3 class="g3-space__margin-sm-bottom">
           {{< param "g3Starts.s1.name" >}}
@@ -78,69 +93,92 @@ g3Starts:
           {{< param "g3Starts.s1.button.caption" >}}
         </a>
       </div>
-      <div class="g3-table g3-space__margin-lg-bottom g3-mb-space__margin-lg-bottom">
-        <div class="g3-col__50 g3-text__center g3-space__padding-sm-left-right">
-          <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s2.fig" >}}"/>
-          <h3 class="g3-space__margin-sm-bottom">
-            {{< param "g3Starts.s2.name" >}}
-          </h3>
-          <p class="g3-space__margin-sm-bottom g3-text__desktop-left">
-            {{< param "g3Starts.s2.detail" >}} <br>       <br> <br>               
-          </p>
-          <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s2.button.link" >}}">
-            {{< param "g3Starts.s2.button.caption" >}}
-          </a>
-        </div>
-    </div>
-    </div>
-  </div>
-</section>
-
-<section>
-  <div class="g3-inner-wrapper g3-space__padding-md-top g3-mb-space__padding-lg-top g3-mb-space__padding-lg-bottom">
-    <div class="g3-table g3-space__margin-lg-bottom g3-mb-space__margin-lg-bottom">
-      <div class="g3-col__50 g3-text__center g3-space__padding-sm-left-right">
-        <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s3.fig" >}}"/>
+      <div class="g3-col__33 g3-text__center g3-space__padding-sm-left-right">
+        <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s2.fig" >}}"/>
         <h3 class="g3-space__margin-sm-bottom">
-          {{< param "g3Starts.s3.name" >}}
+          {{< param "g3Starts.s2.name" >}}
         </h3>
         <p class="g3-space__margin-sm-bottom g3-text__desktop-left">
-          {{< param "g3Starts.s3.detail" >}}
+          {{< param "g3Starts.s2.detail" >}} <br>       <br> <br>               
         </p>
-        <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s3.button.link" >}}">
-          {{< param "g3Starts.s3.button.caption" >}}
+        <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s2.button.link" >}}">
+          {{< param "g3Starts.s2.button.caption" >}}
         </a>
       </div>
-      <div class="g3-col__50 g3-text__center g3-space__padding-sm-left-right">
-        <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s4.fig" >}}"/>
+      <div class="g3-col__33 g3-text__center g3-space__padding-sm-left-right">
+        <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s3.fig" >}}"/>
         <h3 class="g3-space__margin-sm-bottom">
-          {{< param "g3Starts.s4.name" >}}
+          {{< param "g3Starts.s3.name" >}}
         </h3>
         <p class="g3-space__margin-sm-bottom g3-text__desktop-left">
-          {{< param "g3Starts.s4.detail" >}}
+          {{< param "g3Starts.s3.detail" >}} <br>       <br> <br>               
         </p>
-        <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s4.button.link" >}}">
-          {{< param "g3Starts.s4.button.caption" >}}
+        <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s3.button.link" >}}">
+          {{< param "g3Starts.s3.button.caption" >}}
         </a>
       </div>
     </div>
   </div>
 </section>
 
+
 <section>
   <div class="g3-inner-wrapper g3-space__padding-md-top g3-mb-space__padding-lg-top g3-mb-space__padding-lg-bottom">
-    <div class="g3-table g3-space__margin-lg-bottom g3-mb-space__margin-lg-bottom g3-col__50">
-      <div class="g3-col__50 g3-text__center g3-space__padding-sm-left-right">
+    <div class="g3-table g3-space__margin-lg-bottom g3-mb-space__margin-lg-bottom">
+    <div class="g3-col__33 g3-text__center g3-space__padding-sm-left-right">
+      <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s4.fig" >}}"/>
+      <h3 class="g3-space__margin-sm-bottom">
+        {{< param "g3Starts.s4.name" >}}
+      </h3>
+      <p class="g3-space__margin-sm-bottom g3-text__desktop-left">
+        {{< param "g3Starts.s4.detail" >}}
+      </p>
+      <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s4.button.link" >}}">
+        {{< param "g3Starts.s4.button.caption" >}}
+      </a>
+    </div>
+    <div class="g3-col__33 g3-text__center g3-space__padding-sm-left-right">
         <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s5.fig" >}}"/>
         <h3 class="g3-space__margin-sm-bottom">
           {{< param "g3Starts.s5.name" >}}
         </h3>
         <p class="g3-space__margin-sm-bottom g3-text__desktop-left">
           {{< param "g3Starts.s5.detail" >}}
         </p>
-        <a class="g3-button g3-button--primary g3-align__bottom " href="{{< param "g3Starts.s5.button.link" >}}">
+        <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s5.button.link" >}}">
           {{< param "g3Starts.s5.button.caption" >}}
         </a>
+    </div>
+    <div class="g3-col__33 g3-text__center g3-space__padding-sm-left-right">
+      <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s6.fig" >}}"/>
+      <h3 class="g3-space__margin-sm-bottom">
+        {{< param "g3Starts.s6.name" >}}
+      </h3>
+      <p class="g3-space__margin-sm-bottom g3-text__desktop-left">
+        {{< param "g3Starts.s6.detail" >}} <br>       <br> <br>               
+      </p>
+      <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s6.button.link" >}}">
+        {{< param "g3Starts.s6.button.caption" >}}
+      </a>
+      </div>
+    </div>
+  </div>
+</section>
+
+<section>
+  <div class="g3-inner-wrapper g3-space__padding-md-top g3-mb-space__padding-lg-top g3-mb-space__padding-lg-bottom">
+    <div class="g3-table g3-space__margin-lg-bottom g3-mb-space__margin-lg-bottom">
+      <div class="g3-col__33 g3-text__center g3-space__padding-sm-left-right">
+        <img class="g3-row__10vh g3-space__margin-sm-bottom" src="{{< param "g3Starts.s7.fig" >}}"/>
+        <h3 class="g3-space__margin-sm-bottom">
+          {{< param "g3Starts.s7.name" >}}
+        </h3>
+        <p class="g3-col__33 g3-minimum-wrapper g3-space__margin-sm-bottom g3-text__desktop-left">
+          {{< param "g3Starts.s7.detail" >}} <br>  <br>
+        </p>
+        <a class="g3-button g3-button--primary g3-align__bottom" href="{{< param "g3Starts.s7.button.link" >}}">
+          {{< param "g3Starts.s7.button.caption" >}}
+        </a>
       </div>
     </div>
   </div>

diff --git a/content/powered-by-gen3.md b/content/powered-by-gen3.md
@@ -111,7 +111,10 @@ g3Commons:
     title: Pediatric Cancer Data Commons
     fig: /figs/commons/pcdc.png
     link: https://portal.pedscommons.org/
-
+  c27:
+    title: Tox Data Commons
+    fig: /figs/commons/ToxDataCommons.png
+    link: https://toxdatacommons.com/
 ---
 
 
@@ -265,6 +268,11 @@ g3Commons:
          <img class="g3-row__50px" src="{{< param "g3Commons.c26.fig" >}}" />
          </a>
       </div>
+      <div class="g3-common-card">
+         <a target="_blank" href="{{< param "g3Commons.c27.link" >}}" title="{{< param "g3Commons.c27.title" >}}">
+         <img class="g3-row__50px" src="{{< param "g3Commons.c27.fig" >}}" />
+         </a>
+      </div>
    </div>
 </section>         
 <section class="g3-bg__white">