use hadoop image as based image for spark

.github/workflows/image_build_push.yaml

@@ -20,6 +20,7 @@ jobs:
   build-spark-base:
     name: Build Spark base image
     uses: uc-cdis/.github/.github/workflows/image_build_push.yaml@master
+    needs: [build-hadoop-base]
     with:
       OVERRIDE_REPO_NAME: spark-base
       OVERRIDE_TAG_NAME: 3.3.0-hadoop3.3
@@ -111,7 +112,7 @@ jobs:
     needs: [build-spark-base]
     with:
       OVERRIDE_REPO_NAME: spark-master
-      OVERRIDE_TAG_NAME: 3.3.0-hadoop3.3
+      OVERRIDE_TAG_NAME: v3.3.0-hadoop3.3
       DOCKERFILE_LOCATION: "./spark/master/Dockerfile"
       DOCKERFILE_BUILD_CONTEXT: "./spark/master"
       USE_QUAY_ONLY: true

hadoop/base/Dockerfile

@@ -35,6 +35,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
     && rm -rf /var/lib/apt/lists/*
 
 RUN wget ${HADOOP_INSTALLATION_URL} \
+    && ln -s /lib64/ld-linux-x86-64.so.2 /lib/ld-linux-x86-64.so.2 \
     && mkdir -p $HADOOP_HOME \
     && tar -xvf hadoop-${HADOOP_VERSION}.tar.gz -C ${HADOOP_HOME} --strip-components 1 \
     && rm hadoop-${HADOOP_VERSION}.tar.gz \

run_config.py

@@ -27,6 +27,7 @@ def configure_core_site():
     root = tree.getroot()
     root.append(create_property('hadoop.tmp.dir', '{}/hdfs/tmp'.format(config.HADOOP_HOME)))
     root.append(create_property('fs.default.name', config.HADOOP_URL))
+    root.append(create_property('fs.defaultFS', config.HADOOP_URL))
     indent(root)
     tree.write(core_site_path)
 

spark/base/Dockerfile

@@ -1,50 +1,25 @@
 # To check running container: docker exec -it tube /bin/bash
-FROM quay.io/cdis/python:python3.9-buster-stable
+FROM quay.io/cdis/hadoop-base:v3.3.0
 
 ENV DEBIAN_FRONTEND=noninteractive \
-    HADOOP_VERSION="3" \
+    HADOOP_SPARK_VERSION="3" \
     ES_HADOOP_VERSION="8.3.3" \
     SPARK_VERSION="3.3.0"
 
-ENV SPARK_INSTALLATION_URL="http://archive.apache.org/dist/spark/spark-${SPARK_VERSION}/spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}.tgz" \
-    HADOOP_INSTALLATION_URL="http://archive.apache.org/dist/hadoop/common/hadoop-${HADOOP_VERSION}/hadoop-${HADOOP_VERSION}.tar.gz" \
+ENV SPARK_INSTALLATION_URL="http://archive.apache.org/dist/spark/spark-${SPARK_VERSION}/spark-${SPARK_VERSION}-bin-hadoop${HADOOP_SPARK_VERSION}.tgz" \
     SPARK_HOME="/spark" \
     HADOOP_HOME="/hadoop" \
     JAVA_HOME="/usr/lib/jvm/java-11-openjdk-amd64/"
 
 RUN mkdir -p /usr/share/man/man1
 
-RUN apt-get update && apt-get install -y --no-install-recommends \
-    software-properties-common \
-    libpq-dev \
-    build-essential \
-    libssl1.1 \
-    libgnutls30 \
-    ca-certificates-java \
-    openjdk-11-jdk \
-    openssh-server \
-    # dependency for pyscopg2 - which is dependency for sqlalchemy postgres engine
-    libpq-dev \
-    wget \
-    git \
-    # dependency for cryptography
-    libffi-dev \
-    # dependency for cryptography
-    libssl-dev \
-    vim \
-    dnsutils \
-    && rm -rf /var/lib/apt/lists/*
-
 RUN wget $SPARK_INSTALLATION_URL \
     && mkdir -p $SPARK_HOME \
-    && tar -xvf spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}.tgz -C $SPARK_HOME --strip-components 1 \
-    && rm spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}.tgz
+    && tar -xvf spark-${SPARK_VERSION}-bin-hadoop${HADOOP_SPARK_VERSION}.tgz -C $SPARK_HOME --strip-components 1 \
+    && rm spark-${SPARK_VERSION}-bin-hadoop${HADOOP_SPARK_VERSION}.tgz
 
 RUN apt-get --only-upgrade install libpq-dev
 
-ENV PATH="${PATH}:${SPARK_HOME}/bin:${SPARK_HOME}/sbin:${HADOOP_HOME}/sbin:${HADOOP_HOME}/bin:${JAVA_HOME}/bin:${SCALA_HOME}/bin"
-
-
 RUN mkdir -p /var/run/sshd ${HADOOP_HOME}/hdfs ${HADOOP_HOME}/hdfs/data ${HADOOP_HOME}/hdfs/data/dfs ${HADOOP_HOME}/hdfs/data/dfs/namenode ${HADOOP_HOME}/logs
 
 ENV PYTHONHASHSEED 1