Push new nextflow images to ECR #58
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| name: Push new nextflow images to ECR | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: master | |
| paths: | |
| - 'nextflow-base-images/**' #Runs every time this folder gets updated | |
| - '.github/workflows/build_and_push_nf_base_images.yml' | |
| schedule: | |
| - cron: '0 0 * * 6' # Run at midnight UTC every Saturday | |
| jobs: | |
| build_and_push_nf_images: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| path: containers | |
| - name: Checkout other private repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: uc-cdis/base-images | |
| token: ${{ secrets.PLANXCYBORG_TOKEN }} | |
| path: base-images | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Set up AWS CLI | |
| uses: aws-actions/configure-aws-credentials@v2 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID_ACCT_654654631253_ECR }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY_ACCT_654654631253_ECR }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR | |
| run: | | |
| aws ecr-public get-login-password --region $AWS_REGION | docker login --username AWS --password-stdin public.ecr.aws/u5x5h6w3 | |
| - name: Build and push Docker images | |
| run: | | |
| dir=base-images/amazonlinux-base/ | |
| echo "Building an image present in $dir" | |
| image_name=nextflow-approved/public | |
| tag_name=$(basename "$dir") | |
| docker build -t public.ecr.aws/u5x5h6w3/$image_name:$tag_name $dir | |
| docker push public.ecr.aws/u5x5h6w3/$image_name:$tag_name | |
| echo "Built an image with name --> $image_name:$tag_name" | |
| for dir in containers/nextflow-base-images/*/;do | |
| echo "Building an image present in $dir" | |
| image_name=nextflow-approved/public | |
| tag_name=$(basename "$dir") | |
| docker build -t public.ecr.aws/u5x5h6w3/$image_name:$tag_name $dir | |
| docker push public.ecr.aws/u5x5h6w3/$image_name:$tag_name | |
| echo "Built an image with name --> $image_name:$tag_name" | |
| done | |
| - name: Trigger `get_layer_info_for_nf_imgs.yml` workflow | |
| env: | |
| GH_TOKEN: ${{ secrets.PLANXCYBORG_TOKEN }} | |
| run: | | |
| gh api \ | |
| --method POST \ | |
| -H "Accept: application/vnd.github+json" \ | |
| -H "X-GitHub-Api-Version: 2022-11-28" \ | |
| /repos/uc-cdis/containers/actions/workflows/get_layer_info_for_nf_imgs.yml/dispatches \ | |
| -f "ref=master" | |
| - name: Delete untagged docker images from public ECR | |
| run: | | |
| REPO_NAME=nextflow-approved/public | |
| IMAGE_IDS=$(aws ecr-public describe-images --repository-name $REPO_NAME --query 'imageDetails[?imageTags==null].imageDigest' --output text) | |
| if [ -n "$IMAGE_IDS" ]; then | |
| for IMAGE_ID in $IMAGE_IDS; do | |
| echo "Deleting image with SHA hash - $IMAGE_ID" | |
| aws ecr-public batch-delete-image --repository-name $REPO_NAME --image-ids imageDigest=$IMAGE_ID | |
| done | |
| else | |
| echo "No untagged images to delete." | |
| fi |