Push new nextflow images to ECR #57
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Push new nextflow images to ECR | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: master | |
| paths: | |
| - 'nextflow-base-images/**' #Runs every time this folder gets updated | |
| - '.github/workflows/build_and_push_nf_base_images.yml' | |
| schedule: | |
| - cron: '0 0 * * 6' # Run at midnight UTC every Saturday | |
| jobs: | |
| build_and_push_nf_images: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| path: containers | |
| - name: Checkout other private repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: uc-cdis/base-images | |
| token: ${{ secrets.PLANXCYBORG_TOKEN }} | |
| path: base-images | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Set up AWS CLI | |
| uses: aws-actions/configure-aws-credentials@v2 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID_ACCT_654654631253_ECR }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY_ACCT_654654631253_ECR }} | |
| aws-region: us-east-1 | |
| - name: Login to Amazon ECR | |
| run: | | |
| aws ecr-public get-login-password --region $AWS_REGION | docker login --username AWS --password-stdin public.ecr.aws/u5x5h6w3 | |
| - name: Build and push Docker images | |
| run: | | |
| dir=base-images/amazonlinux-base/ | |
| echo "Building an image present in $dir" | |
| image_name=nextflow-approved/public | |
| tag_name=$(basename "$dir") | |
| docker build -t public.ecr.aws/u5x5h6w3/$image_name:$tag_name $dir | |
| docker push public.ecr.aws/u5x5h6w3/$image_name:$tag_name | |
| echo "Built an image with name --> $image_name:$tag_name" | |
| for dir in containers/nextflow-base-images/*/;do | |
| echo "Building an image present in $dir" | |
| image_name=nextflow-approved/public | |
| tag_name=$(basename "$dir") | |
| docker build -t public.ecr.aws/u5x5h6w3/$image_name:$tag_name $dir | |
| docker push public.ecr.aws/u5x5h6w3/$image_name:$tag_name | |
| echo "Built an image with name --> $image_name:$tag_name" | |
| done | |
| - name: Trigger `get_layer_info_for_nf_imgs.yml` workflow | |
| env: | |
| GH_TOKEN: ${{ secrets.PLANXCYBORG_TOKEN }} | |
| run: | | |
| gh api \ | |
| --method POST \ | |
| -H "Accept: application/vnd.github+json" \ | |
| -H "X-GitHub-Api-Version: 2022-11-28" \ | |
| /repos/uc-cdis/containers/actions/workflows/get_layer_info_for_nf_imgs.yml/dispatches \ | |
| -f "ref=master" | |
| - name: Delete untagged docker images from public ECR | |
| run: | | |
| REPO_NAME=nextflow-approved/public | |
| IMAGE_IDS=$(aws ecr-public describe-images --repository-name $REPO_NAME --query 'imageDetails[?imageTags==null].imageDigest' --output text) | |
| if [ -n "$IMAGE_IDS" ]; then | |
| for IMAGE_ID in $IMAGE_IDS; do | |
| echo "Deleting image with SHA hash - $IMAGE_ID" | |
| aws ecr-public batch-delete-image --repository-name $REPO_NAME --image-ids imageDigest=$IMAGE_ID | |
| done | |
| else | |
| echo "No untagged images to delete." | |
| fi |