feat: adapt tests to the latest version

tzok · Nov 20, 2024 · 22ddcb9 · 22ddcb9
1 parent f35a5ee
commit 22ddcb9
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Showing 4 changed files with 10 additions and 10 deletions.
diff --git a/tests/files/2awe-assembly-1.out.json → tests/files/2awe-assembly-1.out b/tests/files/2awe-assembly-1.out.json → tests/files/2awe-assembly-1.out
@@ -42,6 +42,6 @@ n4-helix with 4 tetrads
       propeller- H.U4
       propeller- F.U4
 
-UGGUGU-UGGUGU-UGGUGU-UGGUGU-UGGUGU-UGGUGU-UGGUGU-UGGGU
-.([.{<-.)].{<-.([.}>-.)].}>-.([.{<-.([.}>-.)].{<-.)]}>
-.{<.([-.{<.)]-.}>.([-.}>.)]-.{<.([-.}>.([-.{<.)]-.}>)]
+UGGUG-UUGGUG-UUGGUG-UUGGUG-UUGGUG-UUGGUG-UUGGUG-UUGGGU
+.([.{-[.)(.{-].[).}-(.]].}-).((.[-{.{).]-(.}[.{-).)]}}
+.((.[-{.{).]-(.}[.{-).)].}-}.([.{-[.)(.{-].[).}-(.]]})
diff --git a/tests/files/6fc9-assembly-1.out.json → tests/files/6fc9-assembly-1.out b/tests/files/6fc9-assembly-1.out.json → tests/files/6fc9-assembly-1.out
@@ -17,5 +17,5 @@ n4-helix with 2 tetrads
       lateral+ A.DT24, A.DT25
 
 GGTTGGCGCGAAGCATTCGCGGGTTGG
-((..))...............((..))
-((..((...............))..))
+([..[)...............(]..])
+((..)(...............)(..))
diff --git a/tests/test_cli.py b/tests/test_cli.py
@@ -36,7 +36,7 @@ def test_eltetrado_with_dssr(capfd):
         ]
     )
     out, err = capfd.readouterr()
-    with open("tests/files/2awe-assembly-1.out.json") as f:
+    with open("tests/files/2awe-assembly-1.out") as f:
         assert out == f.read()
 
 
@@ -49,5 +49,5 @@ def test_eltetrado_without_dssr(capfd):
         ]
     )
     out, err = capfd.readouterr()
-    with open("tests/files/6fc9-assembly-1.out.json") as f:
+    with open("tests/files/6fc9-assembly-1.out") as f:
         assert out == f.read()
diff --git a/tests/test_dto.py b/tests/test_dto.py
@@ -105,7 +105,7 @@ def test_5v3f():
     analysis = eltetrado(structure2d, structure3d, False, False, 2)
     dto = generate_dto(analysis)
     assert (
-        dto.dotBracket.sequence == "UGCGAAGGGACGGUGCGGAGAGGAGAGCA-CGGGACGGUGCGGAGAGGAG"
+        dto.dotBracket.sequence == "GUGCGAAGGGACGGUGCGGAGAGGAGAGCA-CGGGACGGUGCGGAGAGGAG"
     )
-    assert dto.dotBracket.line1 == "......([{..)].(.[{.).]}.}....-.([{..)].(.[{.).]}.}"
-    assert dto.dotBracket.line2 == "......([(..[{.).]}.{.)].}....-.([(..[{.).]}.{.)].}"
+    assert dto.dotBracket.line1 == ".......([{..)].(.[{.).]}.}....-.([{..)].(.[{.).]}.}"
+    assert dto.dotBracket.line2 == ".......([(..[{.).]}.{.)].}....-.([(..[{.).]}.{.)].}"