INFRA: Statistical test against external simulators

[daikitag]

The following steps are used in the statistical tests:

1. Simulate a tree sequence data with 10 samples
2. For each replicate, use tstrait to simulate phenotypes for each of the 10 individuals under a normal distribution trait model to get a per-individual phenotype distribution
3. Repeat Step 2 with an external simulator
4. Use QQ-plot to compare the outputs

The following simulators are used:

1. simplePHENOTYPES
2. AlphaSimR
3. Quantitative trait simulation framework that is used in ARG-Needle paper

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 100.00%. Comparing base (255539a) to head (d464469).

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[daikitag]

@jeromekelleher This is ready now, so would it be possible for you to check it whenever you have some time?

[jeromekelleher]

Looks good, but I think you need to delete the data directory?

[daikitag]

Looks good, but I think you need to delete the data directory?

I did not realize that, and thank you for pointing it out.