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deploy: 94b20ef
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@molpopgen
molpopgen committed May 7, 2024
1 parent 9bf50af commit ccd2e4d
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53 changes: 41 additions & 12 deletions 404.html
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@@ -1,5 +1,5 @@
<!DOCTYPE HTML>
<html lang="en" class="sidebar-visible no-js light">
<html lang="en" class="light" dir="ltr">
<head>
<!-- Book generated using mdBook -->
<meta charset="UTF-8">
Expand All @@ -11,7 +11,7 @@

<meta name="description" content="">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="theme-color" content="#ffffff" />
<meta name="theme-color" content="#ffffff">

<link rel="icon" href="favicon.svg">
<link rel="shortcut icon" href="favicon.png">
Expand All @@ -32,7 +32,7 @@
<!-- Custom theme stylesheets -->

</head>
<body>
<body class="sidebar-visible no-js">
<div id="body-container">
<!-- Provide site root to javascript -->
<script>
Expand Down Expand Up @@ -62,42 +62,71 @@
try { theme = localStorage.getItem('mdbook-theme'); } catch(e) { }
if (theme === null || theme === undefined) { theme = default_theme; }
var html = document.querySelector('html');
html.classList.remove('no-js')
html.classList.remove('light')
html.classList.add(theme);
html.classList.add('js');
var body = document.querySelector('body');
body.classList.remove('no-js')
body.classList.add('js');
</script>

<input type="checkbox" id="sidebar-toggle-anchor" class="hidden">

<!-- Hide / unhide sidebar before it is displayed -->
<script>
var html = document.querySelector('html');
var body = document.querySelector('body');
var sidebar = null;
var sidebar_toggle = document.getElementById("sidebar-toggle-anchor");
if (document.body.clientWidth >= 1080) {
try { sidebar = localStorage.getItem('mdbook-sidebar'); } catch(e) { }
sidebar = sidebar || 'visible';
} else {
sidebar = 'hidden';
}
html.classList.remove('sidebar-visible');
html.classList.add("sidebar-" + sidebar);
sidebar_toggle.checked = sidebar === 'visible';
body.classList.remove('sidebar-visible');
body.classList.add("sidebar-" + sidebar);
</script>

<nav id="sidebar" class="sidebar" aria-label="Table of contents">
<div class="sidebar-scrollbox">
<ol class="chapter"><li class="chapter-item expanded affix "><a href="introduction.html">Introduction</a></li><li class="chapter-item expanded "><a href="working_with_table_collections.html"><strong aria-hidden="true">1.</strong> Working with table collections</a></li><li><ol class="section"><li class="chapter-item expanded "><a href="table_collection_creation.html"><strong aria-hidden="true">1.1.</strong> Creation</a></li><li class="chapter-item expanded "><a href="table_collection_adding_rows.html"><strong aria-hidden="true">1.2.</strong> Adding rows</a></li><li class="chapter-item expanded "><a href="table_collection_column_access.html"><strong aria-hidden="true">1.3.</strong> Accessing table columns</a></li><li class="chapter-item expanded "><a href="table_collection_row_access.html"><strong aria-hidden="true">1.4.</strong> Accessing table rows</a></li><li class="chapter-item expanded "><a href="table_collection_validation.html"><strong aria-hidden="true">1.5.</strong> Validating table collection contents</a></li></ol></li><li class="chapter-item expanded "><a href="working_with_tree_sequences.html"><strong aria-hidden="true">2.</strong> Working with tree sequences</a></li><li><ol class="section"><li class="chapter-item expanded "><a href="tree_sequence_from_table_collection.html"><strong aria-hidden="true">2.1.</strong> Initialization from a table collection</a></li><li class="chapter-item expanded "><a href="tree_sequence_iterate_trees.html"><strong aria-hidden="true">2.2.</strong> Iterating over trees</a></li><li class="chapter-item expanded "><a href="tree_sequence_tree.html"><strong aria-hidden="true">2.3.</strong> Working with trees</a></li><li class="chapter-item expanded "><a href="tree_sequence_edge_diffs.html"><strong aria-hidden="true">2.4.</strong> Edge differences</a></li><li class="chapter-item expanded "><a href="tree_sequence_miscellaneous.html"><strong aria-hidden="true">2.5.</strong> Miscellaneous operations</a></li></ol></li><li class="chapter-item expanded "><a href="metadata.html"><strong aria-hidden="true">3.</strong> Metadata</a></li><li><ol class="section"><li class="chapter-item expanded "><a href="metadata_derive.html"><strong aria-hidden="true">3.1.</strong> Defining metadata types in rust</a></li><li class="chapter-item expanded "><a href="metadata_tables.html"><strong aria-hidden="true">3.2.</strong> Metadata and tables</a></li><li class="chapter-item expanded "><a href="metadata_schema.html"><strong aria-hidden="true">3.3.</strong> Metadata schema</a></li><li class="chapter-item expanded "><a href="metadata_advanced.html"><strong aria-hidden="true">3.4.</strong> Advanced topics</a></li></ol></li><li class="chapter-item expanded "><a href="error_handling.html"><strong aria-hidden="true">4.</strong> Error handling</a></li><li class="chapter-item expanded "><a href="examples.html"><strong aria-hidden="true">5.</strong> Example programs</a></li><li><ol class="section"><li class="chapter-item expanded "><a href="examples_haploid_wright_fisher.html"><strong aria-hidden="true">5.1.</strong> Haploid Wright-Fisher simulation</a></li></ol></li><li class="chapter-item expanded "><a href="prelude.html">Crate prelude</a></li><li class="chapter-item expanded affix "><a href="changelog.html">Changelog</a></li><li class="chapter-item expanded affix "><a href="migration_guide.html">Migration Guide</a></li></ol>
</div>
<div id="sidebar-resize-handle" class="sidebar-resize-handle"></div>
<div id="sidebar-resize-handle" class="sidebar-resize-handle">
<div class="sidebar-resize-indicator"></div>
</div>
</nav>

<!-- Track and set sidebar scroll position -->
<script>
var sidebarScrollbox = document.querySelector('#sidebar .sidebar-scrollbox');
sidebarScrollbox.addEventListener('click', function(e) {
if (e.target.tagName === 'A') {
sessionStorage.setItem('sidebar-scroll', sidebarScrollbox.scrollTop);
}
}, { passive: true });
var sidebarScrollTop = sessionStorage.getItem('sidebar-scroll');
sessionStorage.removeItem('sidebar-scroll');
if (sidebarScrollTop) {
// preserve sidebar scroll position when navigating via links within sidebar
sidebarScrollbox.scrollTop = sidebarScrollTop;
} else {
// scroll sidebar to current active section when navigating via "next/previous chapter" buttons
var activeSection = document.querySelector('#sidebar .active');
if (activeSection) {
activeSection.scrollIntoView({ block: 'center' });
}
}
</script>

<div id="page-wrapper" class="page-wrapper">

<div class="page">
<div id="menu-bar-hover-placeholder"></div>
<div id="menu-bar" class="menu-bar sticky bordered">
<div id="menu-bar" class="menu-bar sticky">
<div class="left-buttons">
<button id="sidebar-toggle" class="icon-button" type="button" title="Toggle Table of Contents" aria-label="Toggle Table of Contents" aria-controls="sidebar">
<label id="sidebar-toggle" class="icon-button" for="sidebar-toggle-anchor" title="Toggle Table of Contents" aria-label="Toggle Table of Contents" aria-controls="sidebar">
<i class="fa fa-bars"></i>
</button>
</label>
<button id="theme-toggle" class="icon-button" type="button" title="Change theme" aria-label="Change theme" aria-haspopup="true" aria-expanded="false" aria-controls="theme-list">
<i class="fa fa-paint-brush"></i>
</button>
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67 changes: 38 additions & 29 deletions book.js
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Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ function playground_text(playground, hidden = true) {
}

// updates the visibility of play button based on `no_run` class and
// used crates vs ones available on http://play.rust-lang.org
// used crates vs ones available on https://play.rust-lang.org
function update_play_button(pre_block, playground_crates) {
var play_button = pre_block.querySelector(".play-button");

Expand Down Expand Up @@ -179,7 +179,7 @@ function playground_text(playground, hidden = true) {
// even if highlighting doesn't apply
code_nodes.forEach(function (block) { block.classList.add('hljs'); });

Array.from(document.querySelectorAll("code.language-rust")).forEach(function (block) {
Array.from(document.querySelectorAll("code.hljs")).forEach(function (block) {

var lines = Array.from(block.querySelectorAll('.boring'));
// If no lines were hidden, return
Expand Down Expand Up @@ -346,7 +346,7 @@ function playground_text(playground, hidden = true) {
}

setTimeout(function () {
themeColorMetaTag.content = getComputedStyle(document.body).backgroundColor;
themeColorMetaTag.content = getComputedStyle(document.documentElement).backgroundColor;
}, 1);

if (window.ace && window.editors) {
Expand Down Expand Up @@ -441,16 +441,16 @@ function playground_text(playground, hidden = true) {
})();

(function sidebar() {
var html = document.querySelector("html");
var body = document.querySelector("body");
var sidebar = document.getElementById("sidebar");
var sidebarLinks = document.querySelectorAll('#sidebar a');
var sidebarToggleButton = document.getElementById("sidebar-toggle");
var sidebarResizeHandle = document.getElementById("sidebar-resize-handle");
var firstContact = null;

function showSidebar() {
html.classList.remove('sidebar-hidden')
html.classList.add('sidebar-visible');
body.classList.remove('sidebar-hidden')
body.classList.add('sidebar-visible');
Array.from(sidebarLinks).forEach(function (link) {
link.setAttribute('tabIndex', 0);
});
Expand All @@ -471,8 +471,8 @@ function playground_text(playground, hidden = true) {
});

function hideSidebar() {
html.classList.remove('sidebar-visible')
html.classList.add('sidebar-hidden');
body.classList.remove('sidebar-visible')
body.classList.add('sidebar-hidden');
Array.from(sidebarLinks).forEach(function (link) {
link.setAttribute('tabIndex', -1);
});
Expand All @@ -483,14 +483,14 @@ function playground_text(playground, hidden = true) {

// Toggle sidebar
sidebarToggleButton.addEventListener('click', function sidebarToggle() {
if (html.classList.contains("sidebar-hidden")) {
if (body.classList.contains("sidebar-hidden")) {
var current_width = parseInt(
document.documentElement.style.getPropertyValue('--sidebar-width'), 10);
if (current_width < 150) {
document.documentElement.style.setProperty('--sidebar-width', '150px');
}
showSidebar();
} else if (html.classList.contains("sidebar-visible")) {
} else if (body.classList.contains("sidebar-visible")) {
hideSidebar();
} else {
if (getComputedStyle(sidebar)['transform'] === 'none') {
Expand All @@ -506,14 +506,14 @@ function playground_text(playground, hidden = true) {
function initResize(e) {
window.addEventListener('mousemove', resize, false);
window.addEventListener('mouseup', stopResize, false);
html.classList.add('sidebar-resizing');
body.classList.add('sidebar-resizing');
}
function resize(e) {
var pos = (e.clientX - sidebar.offsetLeft);
if (pos < 20) {
hideSidebar();
} else {
if (html.classList.contains("sidebar-hidden")) {
if (body.classList.contains("sidebar-hidden")) {
showSidebar();
}
pos = Math.min(pos, window.innerWidth - 100);
Expand All @@ -522,7 +522,7 @@ function playground_text(playground, hidden = true) {
}
//on mouseup remove windows functions mousemove & mouseup
function stopResize(e) {
html.classList.remove('sidebar-resizing');
body.classList.remove('sidebar-resizing');
window.removeEventListener('mousemove', resize, false);
window.removeEventListener('mouseup', stopResize, false);
}
Expand Down Expand Up @@ -551,33 +551,41 @@ function playground_text(playground, hidden = true) {
firstContact = null;
}
}, { passive: true });

// Scroll sidebar to current active section
var activeSection = document.getElementById("sidebar").querySelector(".active");
if (activeSection) {
// https://developer.mozilla.org/en-US/docs/Web/API/Element/scrollIntoView
activeSection.scrollIntoView({ block: 'center' });
}
})();

(function chapterNavigation() {
document.addEventListener('keydown', function (e) {
if (e.altKey || e.ctrlKey || e.metaKey || e.shiftKey) { return; }
if (window.search && window.search.hasFocus()) { return; }
var html = document.querySelector('html');

function next() {
var nextButton = document.querySelector('.nav-chapters.next');
if (nextButton) {
window.location.href = nextButton.href;
}
}
function prev() {
var previousButton = document.querySelector('.nav-chapters.previous');
if (previousButton) {
window.location.href = previousButton.href;
}
}
switch (e.key) {
case 'ArrowRight':
e.preventDefault();
var nextButton = document.querySelector('.nav-chapters.next');
if (nextButton) {
window.location.href = nextButton.href;
if (html.dir == 'rtl') {
prev();
} else {
next();
}
break;
case 'ArrowLeft':
e.preventDefault();
var previousButton = document.querySelector('.nav-chapters.previous');
if (previousButton) {
window.location.href = previousButton.href;
if (html.dir == 'rtl') {
next();
} else {
prev();
}
break;
}
Expand Down Expand Up @@ -676,13 +684,14 @@ function playground_text(playground, hidden = true) {
}, { passive: true });
})();
(function controllBorder() {
menu.classList.remove('bordered');
document.addEventListener('scroll', function () {
function updateBorder() {
if (menu.offsetTop === 0) {
menu.classList.remove('bordered');
} else {
menu.classList.add('bordered');
}
}, { passive: true });
}
updateBorder();
document.addEventListener('scroll', updateBorder, { passive: true });
})();
})();
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