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73 Open 948 Closed
73 Open 948 Closed
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Issues list

sim_ancestry with initial state can produce invalid ts when mutations exist above the roots
#2319 opened Aug 28, 2024 by ShyamieG
5
Version 1.3.2 contains untested smc_k code bug
#2312 opened Aug 7, 2024 by jeromekelleher
Add Lineage/lineage_t concept
#2294 opened Jul 17, 2024 by jeromekelleher
@jeromekelleher
1
Coalescent rate trajectory ignores a population's activation time
#2289 opened Jul 6, 2024 by apragsdale
2
multiallelic sites within the VCF
#2266 opened Feb 15, 2024 by LuisGFdez
1
Docs versioning no longer working documentation
#2264 opened Feb 13, 2024 by jeromekelleher 1.3.3
2
Demography.from_demes(): ancestral population sizes and migration rates missing
#2255 opened Feb 2, 2024 by simonharnqvist
6
Save information about sweep in SweepGenicSelection model enhancement
#2243 opened Dec 13, 2023 by jeromekelleher
6
Illogical Lineage Counts in algorithms.py
#2242 opened Dec 12, 2023 by agushin101
7
Update demography tests to stdpopsim 0.2 Infrastructure and tools
#2240 opened Dec 12, 2023 by GertjanBisschop 1.3.3
1
Computing likelihood for decapitated ARGs. enhancement
#2235 opened Dec 7, 2023 by GertjanBisschop
Tests fail with stdpopsim 0.2.0 Infrastructure and tools
#2233 opened Dec 7, 2023 by benjeffery 1.3.3
7
CpG mutation models
#2221 opened Nov 14, 2023 by hyanwong
4
No Sweep Model for Spatially Structured Populations
#2218 opened Oct 31, 2023 by YuanboSong
1
Inconsistencies between algorithm.c and algorithm.py
#2217 opened Oct 31, 2023 by YuanboSong
1
Publish pip wheels for Windows
#2200 opened Sep 4, 2023 by tomwhite
1
Define global stopping condition
#2158 opened Feb 21, 2023 by jeromekelleher 1.3.3
Add option to simulate "above" local roots enhancement
#2157 opened Feb 21, 2023 by jeromekelleher 1.3.3
8
population-specific recombination rates?
#2127 opened Nov 29, 2022 by gtsambos
10
Check performance implication of tracking breakpoints Performance
#2122 opened Nov 8, 2022 by jeromekelleher
1
add stack_policy argument to SLiMMutationModel
#2113 opened Sep 30, 2022 by petrelharp
3
create snakemake wrapper for msp? enhancement
#2104 opened Aug 10, 2022 by andrewkern
2
Implement 2D stepping stone model enhancement
#2100 opened Aug 1, 2022 by connor-french
3
Add example working out NaN bits when working with multiple chromosomes
#2087 opened Jul 4, 2022 by jeromekelleher 1.3.3
Rework sectioning in mutations page documentation
#2084 opened Jul 1, 2022 by jeromekelleher 1.3.3
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