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Package: lassosum | ||
Type: Package | ||
Title: LASSO with summary statistics and a reference panel | ||
Version: 0.2.2 | ||
Version: 0.2.3 | ||
Date: 2015-11-09 | ||
Authors@R: c( | ||
person("Timothy", "Mak", email = "[email protected]", role = c("aut", "cre")), | ||
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@@ -14,19 +14,19 @@ Summary statistics are expected to be loaded into memory as a data.frame/data.ta | |
```r | ||
install.packages(c("RcppArmadillo", "data.table", "Matrix"), dependencies=TRUE) | ||
``` | ||
For Windows users, it would be easiest to download the following binary [lassosum_0.2.2.zip](https://github.com/tshmak/lassosum/releases/download/v0.2.2/lassosum_0.2.2.zip) and install using: | ||
For Windows users, it would be easiest to download the following binary [lassosum_0.2.3.zip](https://github.com/tshmak/lassosum/releases/download/v0.2.3/lassosum_0.2.3.zip) and install using: | ||
```r | ||
install.packages("/path/to/downloaded_binary_file.zip", repos=NULL) | ||
``` | ||
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For Mac and Linux users, we recommend downloading the source codes [lassosum_0.2.2.tar.gz](https://github.com/tshmak/lassosum/releases/download/v0.2.2/lassosum_0.2.2.tar.gz) and compiling on your computer. Mac users will need to install [Xcode](https://developer.apple.com/xcode/) to do this. After downloading, type: | ||
For Mac and Linux users, we recommend downloading the source codes [lassosum_0.2.3.tar.gz](https://github.com/tshmak/lassosum/releases/download/v0.2.3/lassosum_0.2.3.tar.gz) and compiling on your computer. Mac users will need to install [Xcode](https://developer.apple.com/xcode/) to do this. After downloading, type: | ||
```r | ||
install.packages("/path/to/downloaded_source.tar.gz", repos=NULL, type="source") | ||
``` | ||
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If you have `devtools`, you can also type: | ||
```r | ||
install_github("tshmak/[email protected].2") | ||
install_github("tshmak/[email protected].3") | ||
``` | ||
or | ||
```r | ||
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@@ -40,7 +40,7 @@ Most functions in `lassosum` impute missing genotypes in PLINK bfiles with a hom | |
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### Tutorial | ||
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In the following tutorial we make use of two dummy datasets, which can be downloaded [here](https://github.com/tshmak/lassosum/archive/v0.2.2.zip). | ||
In the following tutorial we make use of two dummy datasets, which can be downloaded [here](https://github.com/tshmak/lassosum/archive/v0.2.3.zip). | ||
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The data for this tutorial can be found in `tutorial/data` after unzipping. | ||
We will assume you have set your `R` working directory at `tutorial/` with | ||
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