Build and run the tests of the PyPythia python library. #108
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| name: Build and test PyPythia | |
| run-name: Build and run the tests of the PyPythia python library. | |
| on: [push] | |
| jobs: | |
| Run-Pythia-Tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.13"] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Setup lightgbm requirements | |
| uses: ./.github/actions/setup-lightgbm | |
| - name: Install Pythia and setup requirements | |
| run: | | |
| pip install -e . | |
| pip install pytest | |
| rm tests/test_config.py | |
| echo "RAXMLNG_COMMAND = '${{ env.raxmlng }}'" > tests/test_config.py | |
| cat tests/test_config.py | |
| - name: Run Pythia tests | |
| run: | | |
| PYTHONPATH=. pytest | |
| Install-using-conda: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.13"] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Conda | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| cache-environment: true | |
| create-args: | |
| python=${{ matrix.python-version }} | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Test Pythia installation by running the CLI | |
| uses: ./.github/actions/test-pythia-cli | |
| Install-using-pip: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.13' | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Setup lightgbm requirements | |
| uses: ./.github/actions/setup-lightgbm | |
| - name: Install Pythia using pip | |
| run: | | |
| pip install git+https://github.com/tschuelia/PyPythia.git | |
| - name: Test Pythia installation by running the CLI | |
| uses: ./.github/actions/test-pythia-cli | |
| Install-from-source: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.13' | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Setup lightgbm requirements | |
| uses: ./.github/actions/setup-lightgbm | |
| - name: Install from source | |
| run: | | |
| pip install . | |
| - name: Test Pythia installation by running the CLI | |
| uses: ./.github/actions/test-pythia-cli |