Build and run the tests of the PyPythia python library. #99
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and test PyPythia | |
| run-name: Build and run the tests of the PyPythia python library. | |
| on: [push] | |
| jobs: | |
| Run-Pythia-Tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.11"] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Install Pythia and setup requirements | |
| run: | | |
| pip install -e . | |
| pip install pytest | |
| rm tests/test_config.py | |
| echo "RAXMLNG_COMMAND = '${{ env.raxmlng }}'" > tests/test_config.py | |
| cat tests/test_config.py | |
| - name: Run Pythia tests | |
| run: | | |
| PYTHONPATH=. pytest | |
| Install-using-conda: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.11"] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Conda | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| cache-environment: true | |
| create-args: | |
| python=${{ matrix.python-version }} | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Test Pythia installation by running the CLI | |
| uses: ./.github/actions/test-pythia-cli | |
| Install-using-pip: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Setup lightgbm requirements | |
| run: brew install libomp | |
| - name: Install Pythia using pip | |
| run: | | |
| pip install git+https://github.com/tschuelia/PyPythia.git | |
| - name: Test Pythia installation by running the CLI | |
| uses: ./.github/actions/test-pythia-cli | |
| Install-from-source: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Setup RAxML-NG and RAxML-NG env variable | |
| uses: ./.github/actions/setup-raxmlng | |
| - name: Install from source | |
| run: | | |
| pip install . | |
| - name: Test Pythia installation by running the CLI | |
| uses: ./.github/actions/test-pythia-cli |