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Tpetra MatrixMatrix: sort for cuSparse #13424

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Sorts the inputs to KokkosSparse::spgemm when Kokkos Kernels is going to use the cuSparse TPL.
Kokkos Kernels doesn't really provide a good way to access this information, nor for Tpetra to provide whether or not the matrix is sorted.

Fix for #13339

Related Kokkos Kernels issue kokkos/kokkos-kernels#2194

See unmerged #11709, where it was proposed for Tpetra to always sort a matrix before giving it to Kokkos Kernels.

@cwpearson cwpearson self-assigned this Sep 4, 2024
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CDash Test Results for PR# 13424.

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Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
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All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

@cwpearson cwpearson removed their assignment Sep 4, 2024
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All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

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Hi @cwpearson. In the mean time, our build with this PR as a patch has completed. Everything compiled and all the tests passed. So this PR indeed fixes the issue from #13339.

Comment on lines +178 to +179
// Try to mirror the Kokkos Kernels internal SpGEMM TPL use logic
// inspired by https://github.com/trilinos/Trilinos/pull/11709
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I've followed this link and taken a look at PR #11709. However, it seems it's a closed PR, and it doesn't seem to bring the logic with the check of the cuda version.

So these are a few thoughts:

  • It may be worth double checking that is it indeed Tpetra: Permanent fix for #11655 #11709 that you intend to reference. Or perhaps there is an additional code snippet with the internal SpGEMM TPL use logic?
  • Depending on the intent of the check of the cuda version, it may be useful to see whether it could become a check of the cusparse version, with perhaps a short comment about what changed in the excluded versions.
  • It looks like in PR Tpetra: Permanent fix for #11655 #11709, the sorts were protected with checks of whether or not the matrix graph was already sorted. Would it be useful to use such checks here too?

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I think you're right about checking whether the CrsGraph is sorted, I will add that.

The point of the other logic is just to mirror what Kokkos Kernels does, since that determines whether the TPL is used. That was introduced in kokkos/kokkos-kernels#2008 and subsequently modified, I can note that in the comment as well. We should probably be checking the cusparse version rather than the CUDA version in Kokkos kernels, but that's not what we're doing today 😄

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OK. Got it! :)

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All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

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TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: PR_intel

  • Build Num: 454
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-intel-2021.3-sems-openmpi-4.1.6_release-debug_shared_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: PR_cuda-uvm

  • Build Num: 533
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457

Using Repos:

Repo: TRILINOS (cwpearson/Trilinos)
  • Branch: fix/13339
  • SHA: 3316e49
  • Mode: TEST_REPO

Pull Request Author: cwpearson

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@maartenarnst maartenarnst left a comment

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Thanks for the changes! All looks good to me.

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Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 485
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: PR_gcc

  • Build Num: 535
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: PR_gcc-openmpi_debug

  • Build Num: 536
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: PR_clang

  • Build Num: 534
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
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TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: Trilinos_PR_python3

  • Build Num: 4493
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
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GENCONFIG_BUILD_NAME rhel8_aue-gnu-12.1.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
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TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
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Build Information

Test Name: PR_cuda

  • Build Num: 533
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
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PR_LABELS pkg: Tpetra
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PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
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TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
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TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: PR_intel

  • Build Num: 454
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-intel-2021.3-sems-openmpi-4.1.6_release-debug_shared_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457

Build Information

Test Name: PR_cuda-uvm

  • Build Num: 533
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS pkg: Tpetra
PULLREQUESTNUM 13424
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA 3316e49
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7bcf457


CDash Test Results for PR# 13424.

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Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ csiefer2 ]!

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Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

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Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

@cwpearson cwpearson merged commit 7d68e7f into trilinos:develop Sep 10, 2024
27 of 30 checks passed
@cwpearson cwpearson deleted the fix/13339 branch September 10, 2024 21:07
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4 participants