Merge branch 'main' into arxiv_datascraper

.github/workflows/pre-commit.yml

@@ -0,0 +1,17 @@
+name: pre-commit
+on:
+  pull_request:
+  push:
+    branches: main
+permissions:
+  contents: read
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.9"
+      - run: pip install pre-commit -r requirements.txt
+      - run: pre-commit run --all-files

.pre-commit-config.yaml

@@ -0,0 +1,5 @@
+repos:
+-   repo: https://github.com/psf/black
+    rev: 23.10.1
+    hooks:
+    -   id: black

setup.py

@@ -1,3 +1,3 @@
 from setuptools import setup
 
-setup()
+setup()

tests/test_paper.py

@@ -4,6 +4,7 @@
 from prompt_systematic_review.utils import process_paper_title
 
 
+
 def test_paper():
     paper1 = Paper(
         "How to write a paper",
@@ -31,6 +32,7 @@ def test_paper():
     assert paper1 != paper2 and paper2 != alsoPaper1
 
 
+
 def test_arxiv_source():
     # test that arXiv source returns papers properly
     arxiv_source = ArXivSource()
@@ -58,3 +60,4 @@ def test_arxiv_source():
     assert paper.keywords == [
         "foundational models in medical imaging: a comprehensive survey and future vision"
     ]
+

tests/test_utils.py

@@ -2,5 +2,6 @@
 from prompt_systematic_review.utils import process_paper_title
 
 
+
 def test_process_paper_title():
     assert process_paper_title("Laws  of the\n Wildabeest") == "laws of the wildabeest"