Knit12_taxonomic_distribution_emerging_species.Rmd rest

trias-project · Apr 18, 2024 · 4d2d00c · 4d2d00c
1 parent 68d0bc0
commit 4d2d00c
Show file tree

Hide file tree

Showing 29 changed files with 373 additions and 171 deletions.
diff --git a/.../taxonomic_distribution_emerging_species/n_emerging_taxa_per_class_in_BE_observations.tsv b/.../taxonomic_distribution_emerging_species/n_emerging_taxa_per_class_in_BE_observations.tsv
@@ -0,0 +1,118 @@
+class	kingdom	variable	year	area	n_emerging	n_total
+Magnoliopsida	Plantae	observations	2020	Belgium	206	901
+Insecta	Animalia	observations	2020	Belgium	45	195
+Liliopsida	Plantae	observations	2020	Belgium	42	208
+Aves	Animalia	observations	2020	Belgium	40	225
+Pinopsida	Plantae	observations	2020	Belgium	9	35
+Malacostraca	Animalia	observations	2020	Belgium	8	32
+Polypodiopsida	Plantae	observations	2020	Belgium	8	20
+Arachnida	Animalia	observations	2020	Belgium	7	28
+Gastropoda	Animalia	observations	2020	Belgium	6	21
+Testudines	Animalia	observations	2020	Belgium	6	15
+Mammalia	Animalia	observations	2020	Belgium	4	31
+Bivalvia	Animalia	observations	2020	Belgium	3	13
+Bryopsida	Plantae	observations	2020	Belgium	2	2
+Squamata	Animalia	observations	2020	Belgium	2	16
+	Animalia	observations	2020	Belgium	2	25
+Agaricomycetes	Fungi	observations	2020	Belgium	1	2
+Chilopoda	Animalia	observations	2020	Belgium	1	1
+Clitellata	Animalia	observations	2020	Belgium	1	6
+Diplopoda	Animalia	observations	2020	Belgium	1	3
+Jungermanniopsida	Plantae	observations	2020	Belgium	1	1
+Phaeophyceae	Chromista	observations	2020	Belgium	1	2
+Pucciniomycetes	Fungi	observations	2020	Belgium	1	6
+Ustilaginomycetes	Fungi	observations	2020	Belgium	1	2
+Amphibia	Animalia	observations	2020	Belgium	0	11
+Anthozoa	Animalia	observations	2020	Belgium	0	1
+Ascidiacea	Animalia	observations	2020	Belgium	0	4
+Branchiopoda	Animalia	observations	2020	Belgium	0	1
+Copepoda	Animalia	observations	2020	Belgium	0	1
+Demospongiae	Animalia	observations	2020	Belgium	0	2
+Ginkgoopsida	Plantae	observations	2020	Belgium	0	1
+Gnetopsida	Plantae	observations	2020	Belgium	0	1
+Gymnolaemata	Animalia	observations	2020	Belgium	0	3
+Hydrozoa	Animalia	observations	2020	Belgium	0	2
+Leotiomycetes	Fungi	observations	2020	Belgium	0	1
+Maxillopoda	Animalia	observations	2020	Belgium	0	1
+Monogenea	Animalia	observations	2020	Belgium	0	1
+Phylactolaemata	Animalia	observations	2020	Belgium	0	1
+Polychaeta	Animalia	observations	2020	Belgium	0	4
+Tentaculata	Animalia	observations	2020	Belgium	0	1
+Magnoliopsida	Plantae	observations	2021	Belgium	159	901
+Liliopsida	Plantae	observations	2021	Belgium	53	208
+Insecta	Animalia	observations	2021	Belgium	49	195
+Aves	Animalia	observations	2021	Belgium	42	225
+Pinopsida	Plantae	observations	2021	Belgium	11	35
+Malacostraca	Animalia	observations	2021	Belgium	8	32
+Arachnida	Animalia	observations	2021	Belgium	7	28
+Polypodiopsida	Plantae	observations	2021	Belgium	7	20
+Gastropoda	Animalia	observations	2021	Belgium	6	21
+Testudines	Animalia	observations	2021	Belgium	6	15
+Mammalia	Animalia	observations	2021	Belgium	4	31
+Bivalvia	Animalia	observations	2021	Belgium	3	13
+Squamata	Animalia	observations	2021	Belgium	3	16
+Bryopsida	Plantae	observations	2021	Belgium	2	2
+Agaricomycetes	Fungi	observations	2021	Belgium	1	2
+Chilopoda	Animalia	observations	2021	Belgium	1	1
+Diplopoda	Animalia	observations	2021	Belgium	1	3
+Ginkgoopsida	Plantae	observations	2021	Belgium	1	1
+Gymnolaemata	Animalia	observations	2021	Belgium	1	3
+Jungermanniopsida	Plantae	observations	2021	Belgium	1	1
+Tentaculata	Animalia	observations	2021	Belgium	1	1
+Ustilaginomycetes	Fungi	observations	2021	Belgium	1	2
+	Animalia	observations	2021	Belgium	1	25
+Amphibia	Animalia	observations	2021	Belgium	0	11
+Anthozoa	Animalia	observations	2021	Belgium	0	1
+Ascidiacea	Animalia	observations	2021	Belgium	0	4
+Branchiopoda	Animalia	observations	2021	Belgium	0	1
+Clitellata	Animalia	observations	2021	Belgium	0	6
+Copepoda	Animalia	observations	2021	Belgium	0	1
+Demospongiae	Animalia	observations	2021	Belgium	0	2
+Gnetopsida	Plantae	observations	2021	Belgium	0	1
+Hydrozoa	Animalia	observations	2021	Belgium	0	2
+Leotiomycetes	Fungi	observations	2021	Belgium	0	1
+Maxillopoda	Animalia	observations	2021	Belgium	0	1
+Monogenea	Animalia	observations	2021	Belgium	0	1
+Phaeophyceae	Chromista	observations	2021	Belgium	0	2
+Phylactolaemata	Animalia	observations	2021	Belgium	0	1
+Polychaeta	Animalia	observations	2021	Belgium	0	4
+Pucciniomycetes	Fungi	observations	2021	Belgium	0	6
+Magnoliopsida	Plantae	observations	2022	Belgium	166	901
+Insecta	Animalia	observations	2022	Belgium	46	195
+Liliopsida	Plantae	observations	2022	Belgium	40	208
+Aves	Animalia	observations	2022	Belgium	36	225
+Arachnida	Animalia	observations	2022	Belgium	9	28
+Pinopsida	Plantae	observations	2022	Belgium	8	35
+Malacostraca	Animalia	observations	2022	Belgium	7	32
+Polypodiopsida	Plantae	observations	2022	Belgium	7	20
+Gastropoda	Animalia	observations	2022	Belgium	6	21
+Bivalvia	Animalia	observations	2022	Belgium	4	13
+Mammalia	Animalia	observations	2022	Belgium	3	31
+Amphibia	Animalia	observations	2022	Belgium	2	11
+Bryopsida	Plantae	observations	2022	Belgium	2	2
+Squamata	Animalia	observations	2022	Belgium	2	16
+	Animalia	observations	2022	Belgium	2	25
+Chilopoda	Animalia	observations	2022	Belgium	1	1
+Diplopoda	Animalia	observations	2022	Belgium	1	3
+Ginkgoopsida	Plantae	observations	2022	Belgium	1	1
+Jungermanniopsida	Plantae	observations	2022	Belgium	1	1
+Pucciniomycetes	Fungi	observations	2022	Belgium	1	6
+Agaricomycetes	Fungi	observations	2022	Belgium	0	2
+Anthozoa	Animalia	observations	2022	Belgium	0	1
+Ascidiacea	Animalia	observations	2022	Belgium	0	4
+Branchiopoda	Animalia	observations	2022	Belgium	0	1
+Clitellata	Animalia	observations	2022	Belgium	0	6
+Copepoda	Animalia	observations	2022	Belgium	0	1
+Demospongiae	Animalia	observations	2022	Belgium	0	2
+Gnetopsida	Plantae	observations	2022	Belgium	0	1
+Gymnolaemata	Animalia	observations	2022	Belgium	0	3
+Hydrozoa	Animalia	observations	2022	Belgium	0	2
+Leotiomycetes	Fungi	observations	2022	Belgium	0	1
+Maxillopoda	Animalia	observations	2022	Belgium	0	1
+Monogenea	Animalia	observations	2022	Belgium	0	1
+Phaeophyceae	Chromista	observations	2022	Belgium	0	2
+Phylactolaemata	Animalia	observations	2022	Belgium	0	1
+Polychaeta	Animalia	observations	2022	Belgium	0	4
+Tentaculata	Animalia	observations	2022	Belgium	0	1
+Testudines	Animalia	observations	2022	Belgium	0	15
+Ustilaginomycetes	Fungi	observations	2022	Belgium	0	2
diff --git a/...tion_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Animalia.png b/...tion_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Animalia.png
diff --git a/...ion_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Chromista.png b/...ion_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Chromista.png
diff --git a/...ibution_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Fungi.png b/...ibution_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Fungi.png
diff --git a/...ution_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Plantae.png b/...ution_emerging_species/n_emerging_taxa_per_class_in_BE_observations_Plantae.png
diff --git a/...ic_distribution_emerging_species/n_emerging_taxa_per_class_in_Natura2000_observations.tsv b/...ic_distribution_emerging_species/n_emerging_taxa_per_class_in_Natura2000_observations.tsv
@@ -0,0 +1,118 @@
+class	kingdom	variable	year	area	n_emerging	n_total
+Magnoliopsida	Plantae	observations	2020	Natura2000	420	901
+Insecta	Animalia	observations	2020	Natura2000	95	195
+Liliopsida	Plantae	observations	2020	Natura2000	90	208
+Aves	Animalia	observations	2020	Natura2000	71	225
+Arachnida	Animalia	observations	2020	Natura2000	14	28
+Gastropoda	Animalia	observations	2020	Natura2000	12	21
+Malacostraca	Animalia	observations	2020	Natura2000	11	32
+Mammalia	Animalia	observations	2020	Natura2000	10	31
+Pinopsida	Plantae	observations	2020	Natura2000	10	35
+Polypodiopsida	Plantae	observations	2020	Natura2000	10	20
+Testudines	Animalia	observations	2020	Natura2000	8	15
+	Animalia	observations	2020	Natura2000	7	25
+Amphibia	Animalia	observations	2020	Natura2000	6	11
+Bivalvia	Animalia	observations	2020	Natura2000	5	13
+Squamata	Animalia	observations	2020	Natura2000	5	16
+Ascidiacea	Animalia	observations	2020	Natura2000	3	4
+Pucciniomycetes	Fungi	observations	2020	Natura2000	3	6
+Bryopsida	Plantae	observations	2020	Natura2000	2	2
+Clitellata	Animalia	observations	2020	Natura2000	2	6
+Diplopoda	Animalia	observations	2020	Natura2000	2	3
+Agaricomycetes	Fungi	observations	2020	Natura2000	1	2
+Demospongiae	Animalia	observations	2020	Natura2000	1	2
+Ginkgoopsida	Plantae	observations	2020	Natura2000	1	1
+Gymnolaemata	Animalia	observations	2020	Natura2000	1	3
+Hydrozoa	Animalia	observations	2020	Natura2000	1	2
+Jungermanniopsida	Plantae	observations	2020	Natura2000	1	1
+Monogenea	Animalia	observations	2020	Natura2000	1	1
+Phaeophyceae	Chromista	observations	2020	Natura2000	1	2
+Polychaeta	Animalia	observations	2020	Natura2000	1	4
+Ustilaginomycetes	Fungi	observations	2020	Natura2000	1	2
+Anthozoa	Animalia	observations	2020	Natura2000	0	1
+Branchiopoda	Animalia	observations	2020	Natura2000	0	1
+Chilopoda	Animalia	observations	2020	Natura2000	0	1
+Copepoda	Animalia	observations	2020	Natura2000	0	1
+Gnetopsida	Plantae	observations	2020	Natura2000	0	1
+Leotiomycetes	Fungi	observations	2020	Natura2000	0	1
+Maxillopoda	Animalia	observations	2020	Natura2000	0	1
+Phylactolaemata	Animalia	observations	2020	Natura2000	0	1
+Tentaculata	Animalia	observations	2020	Natura2000	0	1
+Magnoliopsida	Plantae	observations	2021	Natura2000	403	901
+Liliopsida	Plantae	observations	2021	Natura2000	86	208
+Insecta	Animalia	observations	2021	Natura2000	85	195
+Aves	Animalia	observations	2021	Natura2000	73	225
+Gastropoda	Animalia	observations	2021	Natura2000	15	21
+Arachnida	Animalia	observations	2021	Natura2000	13	28
+Polypodiopsida	Plantae	observations	2021	Natura2000	13	20
+Malacostraca	Animalia	observations	2021	Natura2000	10	32
+Pinopsida	Plantae	observations	2021	Natura2000	9	35
+Mammalia	Animalia	observations	2021	Natura2000	8	31
+	Animalia	observations	2021	Natura2000	7	25
+Amphibia	Animalia	observations	2021	Natura2000	6	11
+Testudines	Animalia	observations	2021	Natura2000	6	15
+Bivalvia	Animalia	observations	2021	Natura2000	5	13
+Squamata	Animalia	observations	2021	Natura2000	4	16
+Ascidiacea	Animalia	observations	2021	Natura2000	3	4
+Pucciniomycetes	Fungi	observations	2021	Natura2000	3	6
+Bryopsida	Plantae	observations	2021	Natura2000	2	2
+Clitellata	Animalia	observations	2021	Natura2000	2	6
+Diplopoda	Animalia	observations	2021	Natura2000	2	3
+Agaricomycetes	Fungi	observations	2021	Natura2000	1	2
+Chilopoda	Animalia	observations	2021	Natura2000	1	1
+Demospongiae	Animalia	observations	2021	Natura2000	1	2
+Ginkgoopsida	Plantae	observations	2021	Natura2000	1	1
+Gymnolaemata	Animalia	observations	2021	Natura2000	1	3
+Hydrozoa	Animalia	observations	2021	Natura2000	1	2
+Jungermanniopsida	Plantae	observations	2021	Natura2000	1	1
+Monogenea	Animalia	observations	2021	Natura2000	1	1
+Polychaeta	Animalia	observations	2021	Natura2000	1	4
+Tentaculata	Animalia	observations	2021	Natura2000	1	1
+Ustilaginomycetes	Fungi	observations	2021	Natura2000	1	2
+Anthozoa	Animalia	observations	2021	Natura2000	0	1
+Branchiopoda	Animalia	observations	2021	Natura2000	0	1
+Copepoda	Animalia	observations	2021	Natura2000	0	1
+Gnetopsida	Plantae	observations	2021	Natura2000	0	1
+Leotiomycetes	Fungi	observations	2021	Natura2000	0	1
+Maxillopoda	Animalia	observations	2021	Natura2000	0	1
+Phaeophyceae	Chromista	observations	2021	Natura2000	0	2
+Phylactolaemata	Animalia	observations	2021	Natura2000	0	1
+Magnoliopsida	Plantae	observations	2022	Natura2000	368	901
+Insecta	Animalia	observations	2022	Natura2000	98	195
+Aves	Animalia	observations	2022	Natura2000	74	225
+Liliopsida	Plantae	observations	2022	Natura2000	73	208
+Arachnida	Animalia	observations	2022	Natura2000	13	28
+Malacostraca	Animalia	observations	2022	Natura2000	10	32
+Polypodiopsida	Plantae	observations	2022	Natura2000	10	20
+Gastropoda	Animalia	observations	2022	Natura2000	9	21
+Mammalia	Animalia	observations	2022	Natura2000	9	31
+Pinopsida	Plantae	observations	2022	Natura2000	9	35
+	Animalia	observations	2022	Natura2000	7	25
+Amphibia	Animalia	observations	2022	Natura2000	6	11
+Bivalvia	Animalia	observations	2022	Natura2000	5	13
+Squamata	Animalia	observations	2022	Natura2000	5	16
+Testudines	Animalia	observations	2022	Natura2000	4	15
+Ascidiacea	Animalia	observations	2022	Natura2000	3	4
+Pucciniomycetes	Fungi	observations	2022	Natura2000	3	6
+Bryopsida	Plantae	observations	2022	Natura2000	2	2
+Clitellata	Animalia	observations	2022	Natura2000	2	6
+Diplopoda	Animalia	observations	2022	Natura2000	2	3
+Gymnolaemata	Animalia	observations	2022	Natura2000	2	3
+Polychaeta	Animalia	observations	2022	Natura2000	2	4
+Agaricomycetes	Fungi	observations	2022	Natura2000	1	2
+Chilopoda	Animalia	observations	2022	Natura2000	1	1
+Demospongiae	Animalia	observations	2022	Natura2000	1	2
+Hydrozoa	Animalia	observations	2022	Natura2000	1	2
+Jungermanniopsida	Plantae	observations	2022	Natura2000	1	1
+Monogenea	Animalia	observations	2022	Natura2000	1	1
+Ustilaginomycetes	Fungi	observations	2022	Natura2000	1	2
+Anthozoa	Animalia	observations	2022	Natura2000	0	1
+Branchiopoda	Animalia	observations	2022	Natura2000	0	1
+Copepoda	Animalia	observations	2022	Natura2000	0	1
+Ginkgoopsida	Plantae	observations	2022	Natura2000	0	1
+Gnetopsida	Plantae	observations	2022	Natura2000	0	1
+Leotiomycetes	Fungi	observations	2022	Natura2000	0	1
+Maxillopoda	Animalia	observations	2022	Natura2000	0	1
+Phaeophyceae	Chromista	observations	2022	Natura2000	0	2
+Phylactolaemata	Animalia	observations	2022	Natura2000	0	1
+Tentaculata	Animalia	observations	2022	Natura2000	0	1
diff --git a/...rging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Animalia.png b/...rging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Animalia.png
diff --git a/...ging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Chromista.png b/...ging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Chromista.png
diff --git a/...emerging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Fungi.png b/...emerging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Fungi.png
diff --git a/...erging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Plantae.png b/...erging_species/n_emerging_taxa_per_class_in_Natura2000_observations_Plantae.png